View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5160_low_9 (Length: 421)
Name: NF5160_low_9
Description: NF5160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5160_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 34316650 - 34316246
Alignment:
| Q |
1 |
actactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttcatttcttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316650 |
actactctagctttctttatgaaagtttgatctaagaatacttggtcatcatgtttactatcaaaatctttccttttcttcattaagttcatttcttttc |
34316551 |
T |
|
| Q |
101 |
ctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcacgtattctttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316550 |
ctacagcaaacaggttaccatcatcagtgtgatctgatccattcctcattaagtgaattccctcaagactttcaaattctcttgcctcacgtattctttt |
34316451 |
T |
|
| Q |
201 |
tcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccctgctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316450 |
tcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgctccatgttgaacacctttcatcaccctgctt |
34316351 |
T |
|
| Q |
301 |
gtttctccatcaacagacatcactacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316350 |
gtttctccatcaacagacatcactacataacattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatatt |
34316251 |
T |
|
| Q |
401 |
gtaac |
405 |
Q |
| |
|
||||| |
|
|
| T |
34316250 |
gtaac |
34316246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34322000 - 34321968
Alignment:
| Q |
1 |
actactctagctttctttatgaaagtttgatct |
33 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
34322000 |
actactctagctttctttatggaagtttgatct |
34321968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 170 - 324
Target Start/End: Original strand, 38953054 - 38953208
Alignment:
| Q |
170 |
tttcaaattctcttgcctcacgtattctttttcttaagacatgttgccatatgtttcgcacttctttcatccttataggcttaagcaaataatcacatgc |
269 |
Q |
| |
|
||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
38953054 |
tttcaaattctctaacctcgtgtatcctttttctgaagacatgttgccatatatttcgcaactctttcatccttatgggcttaaggagataatcacatgc |
38953153 |
T |
|
| Q |
270 |
tccatgttgaacacctttcatcaccctgcttgtttctccatcaacagacatcact |
324 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
38953154 |
accgtgttggacgcctttcatcaccctgcttgtttctccatccacggacatcact |
38953208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University