View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161-Insertion-1 (Length: 931)

Name: NF5161-Insertion-1
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161-Insertion-1
NF5161-Insertion-1
[»] chr6 (34 HSPs)
chr6 (8-739)||(31289665-31290370)
chr6 (8-333)||(26651969-26652300)
chr6 (8-333)||(26757937-26758268)
chr6 (36-381)||(27421059-27421403)
chr6 (737-922)||(31290408-31290598)
chr6 (208-358)||(26632715-26632865)
chr6 (208-358)||(26738691-26738841)
chr6 (420-517)||(27420964-27421061)
chr6 (269-485)||(31394770-31394987)
chr6 (685-733)||(26952498-26952546)
chr6 (685-733)||(26961991-26962039)
chr6 (685-733)||(26980289-26980337)
chr6 (685-722)||(26649356-26649393)
chr6 (685-722)||(26755324-26755361)
chr6 (737-782)||(27608250-27608295)
chr6 (737-782)||(27715637-27715682)
chr6 (827-899)||(5970098-5970170)
chr6 (827-899)||(15443692-15443764)
chr6 (846-885)||(2820373-2820412)
chr6 (737-784)||(26058891-26058938)
chr6 (737-784)||(26078861-26078908)
chr6 (826-897)||(32313403-32313474)
chr6 (826-884)||(8931591-8931649)
chr6 (827-885)||(9195744-9195802)
chr6 (827-885)||(9617445-9617503)
chr6 (827-885)||(16766708-16766766)
chr6 (839-888)||(10335378-10335427)
chr6 (827-896)||(25038061-25038130)
chr6 (827-884)||(26562701-26562758)
chr6 (31-108)||(26632634-26632711)
chr6 (31-108)||(26738610-26738687)
chr6 (738-771)||(26876539-26876572)
chr6 (843-888)||(29449689-29449734)
chr6 (845-898)||(34625732-34625785)
[»] scaffold0003 (2 HSPs)
scaffold0003 (36-381)||(65960-66304)
scaffold0003 (420-517)||(66302-66399)
[»] scaffold0022 (1 HSPs)
scaffold0022 (833-900)||(99889-99956)
[»] chr1 (12 HSPs)
chr1 (778-902)||(264598-264724)
chr1 (827-885)||(44482241-44482299)
chr1 (839-899)||(14332406-14332465)
chr1 (849-893)||(23605132-23605176)
chr1 (854-897)||(17080898-17080941)
chr1 (827-897)||(5376490-5376560)
chr1 (833-895)||(6427351-6427413)
chr1 (566-596)||(18008612-18008642)
chr1 (827-885)||(25361897-25361955)
chr1 (831-885)||(34712377-34712431)
chr1 (844-890)||(43609825-43609871)
chr1 (854-899)||(21057780-21057825)
[»] chr5 (11 HSPs)
chr5 (827-885)||(22423802-22423860)
chr5 (832-890)||(4991372-4991429)
chr5 (831-900)||(38749557-38749626)
chr5 (833-876)||(16374338-16374381)
chr5 (827-897)||(3966502-3966572)
chr5 (827-897)||(18592072-18592142)
chr5 (827-885)||(21522761-21522819)
chr5 (827-885)||(21533327-21533385)
chr5 (833-895)||(43208270-43208332)
chr5 (834-895)||(36838544-36838605)
chr5 (831-884)||(41558648-41558701)
[»] chr3 (7 HSPs)
chr3 (783-888)||(45382751-45382858)
chr3 (826-897)||(16192739-16192810)
chr3 (827-895)||(8039825-8039893)
chr3 (849-900)||(19323460-19323511)
chr3 (841-896)||(28576716-28576771)
chr3 (837-899)||(35990525-35990587)
chr3 (831-896)||(3185242-3185306)
[»] chr7 (9 HSPs)
chr7 (827-885)||(6028636-6028694)
chr7 (832-885)||(7328686-7328739)
chr7 (824-885)||(7438717-7438778)
chr7 (831-894)||(31808503-31808566)
chr7 (841-888)||(43160492-43160539)
chr7 (831-885)||(17307904-17307958)
chr7 (827-885)||(24339653-24339711)
chr7 (831-896)||(16341496-16341561)
chr7 (828-897)||(32308119-32308188)
[»] chr2 (2 HSPs)
chr2 (839-885)||(44605141-44605187)
chr2 (837-899)||(31026692-31026754)
[»] scaffold0349 (1 HSPs)
scaffold0349 (737-782)||(16263-16308)
[»] chr8 (6 HSPs)
chr8 (837-896)||(12985392-12985451)
chr8 (827-885)||(22651987-22652045)
chr8 (737-775)||(29270983-29271021)
chr8 (827-885)||(29447100-29447158)
chr8 (834-888)||(31681827-31681881)
chr8 (833-898)||(31548289-31548354)
[»] chr4 (5 HSPs)
chr4 (826-885)||(24613690-24613749)
chr4 (827-897)||(35723374-35723445)
chr4 (849-900)||(44796974-44797025)
chr4 (824-885)||(4383379-4383439)
chr4 (831-896)||(18513235-18513300)


Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 31289665 - 31290370
Alignment:
Q  8 ggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatg 100  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31289665 ggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttgcattttcccaatgatttcaatgatg 31289764  T
Q  101 aattattgaaggcagtgcagagatatggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31289765 aattattgaaggcagtgcagagatatggctcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcga 31289864  T
Q  201 ttgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaaca 300  Q
    |||||||||||||||||||||          ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289865 ttgtgaggattccctatggac----------gcgatc------------gatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaaca 31289942  T
Q  301 tcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289943 tcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgattt 31290042  T
Q  401 ccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtga 500  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290043 ccggaaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtga 31290142  T
Q  501 cattaatagcattctttctcttcaatggagactattacaccgtgaacaaaatgaggatattatatagcttagatagataacttgtagtacaagttatctt 600  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||           ||||||||||||||||    
T  31290143 cattaatagcattctttctcttctatggagactattacaccatgagcaaaatgaggatattatatagcttaga-----------tagtacaagttatctt 31290231  T
Q  601 agtgtagtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagtt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290232 agtgtagtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaattttgagtcaggttagtt 31290331  T
Q  701 gttgttttatcttgcaatatatagtgtttgatactgaca 739  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31290332 gttgttttatcttgcaatatatagtgtttgatactgaca 31290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 26651969 - 26652300
Alignment:
Q  8 ggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatg 100  Q
    ||||||||||||||||||||||       ||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  26651969 ggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtttttccaatgatttcaaggatg 26652068  T
Q  101 aattattgaaggcagtgcagagat-atggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcg 199  Q
    |||||||||||||||||||||||| |||| |||||||| ||||        ||||||||| || || |||| |||| ||||||||||| ||||| |||||    
T  26652069 aattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaagatagacttcataaccggctcg 26652166  T
Q  200 attgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaac 299  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| |||| ||||||| |||  |||||    
T  26652167 attgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaac 26652266  T
Q  300 atcacaacacccgaccttcagcttcaatatccct 333  Q
    |||||| |||||||||||||||||||||||||||    
T  26652267 atcacatcacccgaccttcagcttcaatatccct 26652300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 26757937 - 26758268
Alignment:
Q  8 ggatgttgataaatggttgcca-------caacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatg 100  Q
    ||||||||||||||||||||||       ||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  26757937 ggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtgatatttgcgtttttccaatgatttcaaggatg 26758036  T
Q  101 aattattgaaggcagtgcagagat-atggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcg 199  Q
    |||||||||||||||||||||||| |||| |||||||| ||||        ||||||||| || || |||| |||| ||||||||||| ||||| |||||    
T  26758037 aattattgaaggcagtgcagagattatggttcacatcattgccaaaaaa--aatgtgtttggtttgggactcttacaagatagacttcataaccggctcg 26758134  T
Q  200 attgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaac 299  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| | |||||||||| |||||||| |||| ||||||| |||  |||||    
T  26758135 attgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaac 26758234  T
Q  300 atcacaacacccgaccttcagcttcaatatccct 333  Q
    |||||| |||||||||||||||||||||||||||    
T  26758235 atcacatcacccgaccttcagcttcaatatccct 26758268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 36 - 381
Target Start/End: Complemental strand, 27421403 - 27421059
Alignment:
Q  36 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcaca 134  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| |||| ||||||||||    
T  27421403 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 27421305  T
Q  135 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcg 234  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  27421304 tcagtgctaaaaaaagt-tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacg 27421206  T
Q  235 atccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatcccta 334  Q
    ||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||     
T  27421205 atccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctg 27421106  T
Q  335 atttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 381  Q
     |||||||||| | || ||| |||||  |||||||||||||||||||    
T  27421105 gtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 27421059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 737 - 922
Target Start/End: Original strand, 31290408 - 31290598
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 836  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290408 acagaaactacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 31290507  T
Q  837 cgacaccgacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaaatcaatgtcaatgttaattt 922  Q
     ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  31290508 tgacaccgacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgac-gaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 208 - 358
Target Start/End: Original strand, 26632715 - 26632865
Alignment:
Q  208 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 307  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  308 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 358  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26632865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 208 - 358
Target Start/End: Original strand, 26738691 - 26738841
Alignment:
Q  208 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 307  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  308 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 358  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 27421061 - 27420964
Alignment:
Q  420 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 517  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  27421061 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 27420964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 485
Target Start/End: Original strand, 31394770 - 31394987
Alignment:
Q  269 cagttccactcactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtg 367  Q
    ||||||| | ||||| ||||||||||| |||| |||||||||| |||||||||||||||||| | |  ||| |||||| | |||||| ||||   ||||     
T  31394770 cagttccccgcactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatatacatggtttttgcatcatcatctttaatccatgcggtt 31394869  T
Q  368 atgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggtgtt 467  Q
    ||||  || |||||||||    |||||| ||||| |   ||| |||||||| |||||||||||| |||||  || ||||||||| |||  ||||||| |     
T  31394870 atgaacgcagatttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcctctattgctggcattggatagagcaaaacttggggtttg 31394969  T
Q  468 cagcttcttgtctctggc 485  Q
     | |||||||||||||||    
T  31394970 aatcttcttgtctctggc 31394987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 685 - 733
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
Q  685 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 733  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26952498 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26952546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 685 - 733
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
Q  685 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 733  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26961991 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26962039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 733
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
Q  685 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 733  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  26980289 ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata 26980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 722
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
Q  685 ttgagtcaggttagttgttgttttatcttgcaatatat 722  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26649356 ttgagtcaggttcgttgttgttttatcttgcaatatat 26649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 722
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
Q  685 ttgagtcaggttagttgttgttttatcttgcaatatat 722  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26755324 ttgagtcaggttcgttgttgttttatcttgcaatatat 26755361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 782
Target Start/End: Complemental strand, 27608295 - 27608250
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaac 782  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  27608295 acagaaactacatgaggctggatgcacctattttgaattcccaaac 27608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 782
Target Start/End: Complemental strand, 27715682 - 27715637
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaac 782  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  27715682 acagaaactacatcaggctggatgcacctatattaaattcccaaac 27715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 827 - 899
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 827 - 899
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 846 - 885
Target Start/End: Original strand, 2820373 - 2820412
Alignment:
Q  846 catatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaatta 2820412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 784
Target Start/End: Original strand, 26058891 - 26058938
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 784  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26058891 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 784
Target Start/End: Original strand, 26078861 - 26078908
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 784  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26078861 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 897
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  826 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 826 - 884
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  826 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 884  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 839 - 888
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  839 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 888  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 896
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 884
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 884  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26632634 - 26632711
Alignment:
Q  31 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 108  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26632634 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26632711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26738610 - 26738687
Alignment:
Q  31 aacatattctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattg 108  Q
    |||| ||||||||||||||| |||||||||||   |||| ||||   ||||| | |||||||| ||||||||||||||    
T  26738610 aacagattctcggtgaaaggatgttatcaagagtagtgaaattttgtttttcacgatgatttcgatgatgaattattg 26738687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 738 - 771
Target Start/End: Original strand, 26876539 - 26876572
Alignment:
Q  738 cagaaactacatgaggctggaggcacctatattc 771  Q
    ||||||||||||||||||||| ||||||||||||    
T  26876539 cagaaactacatgaggctggatgcacctatattc 26876572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 843 - 888
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  843 cgacatatgtaattacattcatttatgttattttctcaaattacta 888  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 845 - 898
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  845 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 898  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 146; Significance: 2e-76; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 36 - 381
Target Start/End: Original strand, 65960 - 66304
Alignment:
Q  36 attctcggtgaaaggttgttatcaagatctgtgatatttgcgttttcccaatgatttcaatgatgaattattgaaggcagtgcagagat-atggctcaca 134  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||| | ||||||||| | ||||||||||||||||||||||| |||| ||||||||||    
T  65960 attctcagagaaaggatgttatcaagagctgtgaaatttgcgtttttc-aatgatttcgacgatgaattattgaaggcagtgcatagattatggctcaca 66058  T
Q  135 tcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcg 234  Q
    |||||||        |  ||||| | ||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  66059 tcagtgctaaaaaaagt-tgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacg 66157  T
Q  235 atccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatcccta 334  Q
    ||||||||||||||| ||||||||||||||||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||     
T  66158 atccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctg 66257  T
Q  335 atttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt 381  Q
     |||||||||| | || ||| |||||  |||||||||||||||||||    
T  66258 gtttctgcatcatcatattttatcccagcggtgatgagtgctgattt 66304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 420 - 517
Target Start/End: Original strand, 66302 - 66399
Alignment:
Q  420 tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttcttgtctctggcgttggatttgagtgacattaatagcattcttt 517  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  66302 tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttcttgtctctggcgttggatttgagtgacatccatagcactcttt 66399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 833 - 900
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  833 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 900  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 778 - 902
Target Start/End: Complemental strand, 264724 - 264598
Alignment:
Q  778 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 875  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  876 tctcaaattactatcggtgtcgacaaa 902  Q
    ||| |||||| ||| |||| |||||||    
T  264624 tcttaaattaatattggtgacgacaaa 264598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 839 - 899
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  839 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 849 - 893
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  849 atgtaattacattcatttatgttattttctcaaattactatcggt 893  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 897
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  854 attacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 897
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 895
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  833 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 895  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 566 - 596
Target Start/End: Original strand, 18008612 - 18008642
Alignment:
Q  566 agcttagatagataacttgtagtacaagtta 596  Q
    |||||||||||||||||||||||||||||||    
T  18008612 agcttagatagataacttgtagtacaagtta 18008642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 885
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 844 - 890
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  844 gacatatgtaattacattcatttatgttattttctcaaattactatc 890  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 854 - 899
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  854 attacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 827 - 885
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 832 - 890
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  832 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 890  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 831 - 900
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 900  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 833 - 876
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  833 gacacgacaccgacatatgtaattacattcatttatgttatttt 876  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 897
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 897
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 895
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  833 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 895  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 895
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  834 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 895  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 884
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 884  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 783 - 888
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  783 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 880  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  881 aattacta 888  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 826 - 897
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  826 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 827 - 895
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 895  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 849 - 900
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  849 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 900  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 896
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  841 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 837 - 899
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  837 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 832 - 885
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  832 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 824 - 885
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  824 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 831 - 894
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 894  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 888
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  841 accgacatatgtaattacattcatttatgttattttctcaaattacta 888  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 885
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 896
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 828 - 897
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  828 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 897  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 839 - 885
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  839 acaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 837 - 899
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  837 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 899  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 782
Target Start/End: Original strand, 16263 - 16308
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaattcccaaac 782  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  16263 acagaaactacatcaggctggatgcacctatattaaattcccaaac 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 896
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  837 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 737 - 775
Target Start/End: Complemental strand, 29271021 - 29270983
Alignment:
Q  737 acagaaactacatgaggctggaggcacctatattcaatt 775  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29271021 acagaaactacatgagactggatgcacctatattcaatt 29270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 827 - 885
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 834 - 888
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  834 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 888  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 833 - 898
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  833 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 898  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 885
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  826 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 827 - 897
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  827 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 897  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 849 - 900
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  849 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 900  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 824 - 885
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  824 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 885  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  831 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 896  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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