View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161-Insertion-12 (Length: 391)

Name: NF5161-Insertion-12
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161-Insertion-12
NF5161-Insertion-12
[»] chr7 (1 HSPs)
chr7 (8-391)||(36723306-36723689)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 36723689 - 36723306
Alignment:
Q  8 ggttactagtaatcctccaaaatgaacacgtgcccactccaatagtaggcaagttgagtataatggtagtagtaggccttgcgtgggccgatatagaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36723689 ggttactagtaatcctccaaaatgaacacgtgcccactccaatagtaggcaagttgagtataatggtagtagtaggccttgcgtgggccgatatagaaat 36723590  T
Q  108 aatttcacatcaagagcctcgcgttccacgcatgtaataaaaaatagtaagacatattagcacatgtttgcattttccatggttgacaagccactataaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36723589 aatttcacatcaagagcctcgcgttccacgcatgtaataaaaaatagtaagacatattagcacatgtttgcattttccatggttgacaagccactataaa 36723490  T
Q  208 agaaacacttcctaatactcatagatctgtatgccttcagcacaaaatataatggcaacctcaattggttgcatatattactatcttttgttccttcttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36723489 agaaacacttcctaatactcatagatctgtatgccttcagcacaaaatataatggcaacctcaattggttgcatatattactatcttttgttccttcttt 36723390  T
Q  308 ggttgctctctactatcaccttatttgtcgaaagtcatgttgtgcttgtacgtgggaaactattccttttgagaaacattcagt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36723389 ggttgctctctactatcaccttatttgtcgaaagtcatgttgtgcttgtacgtgggaaactattccttttgagaaacattcagt 36723306  T

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