View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161-Insertion-3 (Length: 758)

Name: NF5161-Insertion-3
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161-Insertion-3
NF5161-Insertion-3
[»] chr2 (2 HSPs)
chr2 (7-343)||(40992962-40993305)
chr2 (465-691)||(40991981-40992221)
[»] chr6 (1 HSPs)
chr6 (34-119)||(29058675-29058760)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 40993305 - 40992962
Alignment:
Q  7 agtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40993305 agtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatg 40993206  T
Q  107 tattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40993205 tattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagtt 40993106  T
Q  207 ccatt-------gtgatattgctactttagagttatgctagatattgtacaaggaaatgatgcactatatacgcttaaatactagtactagtttatagaa 299  Q
    |||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40993105 ccattgtgaattgtgatattgctactttagagttaggctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtactagtttatagaa 40993006  T
Q  300 aggggctaaaagtaatatcagcagtgacacaataatttggaaga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40993005 aggggctaaaagtaatatcagcagtgacacaataatttggaaga 40992962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 465 - 691
Target Start/End: Complemental strand, 40992221 - 40991981
Alignment:
Q  465 caataagagatctaattcccaactaaaatggttaagaaattaagatatctcagttgt--------------tttggcaaattttcannnnnnnnaaacat 550  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||| |        ||||||    
T  40992221 caataagagatcgaattcccaactaaaatggttaagaaattaagatatctcagttgtcaaaatataataggtttggcaaatttttattttttttaaacat 40992122  T
Q  551 gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctcttcgtcacgcaactcatcccatccagatgtcgcctcaattgaattttc 650  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  40992121 gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctctttgtcacgtaactcatcccatccagatgtcgcctcaattgaattttc 40992022  T
Q  651 ctattatttatatttccacaagttctgaattcacattttgt 691  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  40992021 ctattatttacatttccacgagttctgaattcacattttgt 40991981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 29058760 - 29058675
Alignment:
Q  34 aatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaata 119  Q
    |||||||||||| |  ||||| |||||||||||||||||||| || ||||     ||| ||| ||||||||||||||||| |||||    
T  29058760 aatgaagtggaattcaacattagggtttataggaacatctgagaacttgatgttgttggattcagctccaatgtattctctgaata 29058675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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