View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161-Insertion-9 (Length: 513)

Name: NF5161-Insertion-9
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161-Insertion-9
NF5161-Insertion-9
[»] chr6 (7 HSPs)
chr6 (26-286)||(1236096-1236355)
chr6 (302-513)||(1236346-1236557)
chr6 (300-435)||(1183239-1183373)
chr6 (31-96)||(1233304-1233369)
chr6 (325-389)||(1194126-1194190)
chr6 (450-512)||(1183182-1183244)
chr6 (428-485)||(1194054-1194111)
[»] scaffold0302 (1 HSPs)
scaffold0302 (296-511)||(20346-20565)
[»] chr7 (1 HSPs)
chr7 (296-367)||(20256439-20256510)
[»] chr4 (1 HSPs)
chr4 (296-402)||(12857370-12857476)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 1236096 - 1236355
Alignment:
Q  26 attacatgttacgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtcttccaacttctatgttcatcttaatcattga 125  Q
    ||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1236096 attacatgttatgaatactt-ggtggatgtgaacgtgtcttcatttttatcttcatcaatagaatggtcttccaacttctatgtgcatcttaatcattga 1236194  T
Q  126 aattagtggaacactaatgacattatcttaattagaccattaatatacctgtattttattagttctgtcctataaataggactcttgtaagaatgtacaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236195 aattagtggaacactaatgacattatcttaattagaccattaatatacctgtattttattagttctgtcctataaataggactcttgtaagaatgtacaa 1236294  T
Q  226 agaacttagtatttctaacttggtatttctaagttgttgttaaacttgatcgacaataaca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236295 agaacttagtatttctaacttggtatttctaagttgttgttaaacttgatcgacaataaca 1236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 302 - 513
Target Start/End: Original strand, 1236346 - 1236557
Alignment:
Q  302 gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacactaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1236346 gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccccgacacactaaa 1236445  T
Q  402 aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236446 aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc 1236545  T
Q  502 aattgtcatcca 513  Q
    ||||||||||||    
T  1236546 aattgtcatcca 1236557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 435
Target Start/End: Complemental strand, 1183373 - 1183239
Alignment:
Q  300 aagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacacta 399  Q
    |||||||| ||||||||  || |  ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||  ||||||    
T  1183373 aagacaatcacacatgacagatgcaaaaatatcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaact-ccctcgacacta 1183275  T
Q  400 aaaacacacccaacagcaacacaaagctcgcaaaaa 435  Q
    ||||||||  |||||||||||  |||| ||||||||    
T  1183274 aaaacacattcaacagcaacatgaagcgcgcaaaaa 1183239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 1233304 - 1233369
Alignment:
Q  31 atgttacgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtctt 96  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  1233304 atgttatgaatactttggtggatgtgaatgtgtcctcatgtttatcttcttcagtagaatggtctt 1233369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 1194190 - 1194126
Alignment:
Q  325 aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc 389  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  1194190 aaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc 1194126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 1183244 - 1183182
Alignment:
Q  450 caaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatcc 512  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  1183244 caaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatcc 1183182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 428 - 485
Target Start/End: Complemental strand, 1194111 - 1194054
Alignment:
Q  428 cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacat 485  Q
    |||||||| | ||||||||||||||||| ||||||  ||||| |||||||||||||||    
T  1194111 cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacat 1194054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 296 - 511
Target Start/End: Complemental strand, 20565 - 20346
Alignment:
Q  296 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac 395  Q
    |||||| ||||||||||||||  ||  ||||||||||||| |||| |||| | |  ||||||||||| |||||||| |||||||||||| |||||  |||    
T  20565 cctaaatacaataacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccccagcac 20466  T
Q  396 actaaaaacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctaca----aaaacagaactttgcagacctgcattatctacatcaaaac 491  Q
    ||||||||||||||||||| |||||| |||| | |||||| || ||||||| ||||    |||||||||||  |||||||||||||||| ||||  ||||    
T  20465 actaaaaacacacccaacaacaacacgaagcacacaaaaatagcgcaacaggtacaaaataaaacagaactcggcagacctgcattatccacattgaaac 20366  T
Q  492 ctagatattcaattgtcatc 511  Q
    |||||||||| |||| ||||    
T  20365 ctagatattctattgccatc 20346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 20256439 - 20256510
Alignment:
Q  296 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcatag 367  Q
    |||||||||||||||||||||  || |||||||||||||| |||| |||| |||| ||| ||||||||||||    
T  20256439 cctaaagacaataacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag 20256510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 12857476 - 12857370
Alignment:
Q  296 cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac 395  Q
    |||||| | ||||||||||||   | |||||||||||||| |||| ||||||||   ||||||| ||||||||||| | |||||||||| |||||  |||    
T  12857476 cctaaatataataacacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccccagcac 12857377  T
Q  396 actaaaa 402  Q
    |||||||    
T  12857376 actaaaa 12857370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University