View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_high_1 (Length: 798)
Name: NF5161_high_1
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 702; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Complemental strand, 45392180 - 45391399
Alignment:
| Q |
1 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatgg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||| |
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| T |
45392180 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagtttatgttttgattatcatggcatagcatatgg |
45392081 |
T |
|
| Q |
101 |
tatgtttgatttgtaaaag-taagtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacct |
199 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45392080 |
tatgtttgatttgtaaaaggtaagtgtttgattcgtgtatttgagttactcacatggtcagaattaaatattgatatgacttaaaaccttgaagagacct |
45391981 |
T |
|
| Q |
200 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaatcattttgctctttcttatcttctcaatatgattcataaaactgacaccattct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
45391980 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaatcattttgctctttcttatcttctcaatatgattcataacattgccaccattct |
45391881 |
T |
|
| Q |
300 |
atcggcaatgattcaatggtggtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatt |
399 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391880 |
atcgacaatgattcaatggtagtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatt |
45391781 |
T |
|
| Q |
400 |
tcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggacccccttccagcttatacagtaatcttgagtttgaatctatattttat |
499 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391780 |
tcattaagcatgtaaactaactatcgaagagagcttgtatgggatgttaggactcccttccagcttatacagtaatcttgagtttgaatctatattttat |
45391681 |
T |
|
| Q |
500 |
gagatcagaaataggcgtctcagttgaggacctgagataggtcagtgccacactaagaatatgttctactatttatggaagtcgatgagctacattctga |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
45391680 |
gagatcagaaataggcgtctcagttgaggacctgagataggtcagtgccacactaagaatatattctactatttatgaaagtcgatgagctacattctga |
45391581 |
T |
|
| Q |
600 |
ctaccgcggcataacttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaactgcttgcttacagctcaacaaagaaa |
699 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45391580 |
ctaccacggcataacttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaattgcttgcttacagctcaacaaagaaa |
45391481 |
T |
|
| Q |
700 |
accaccaagaataattactatctcctaagattataggataacatgtagatgatgaaaaccttcttcagataccggacaaaag |
781 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391480 |
accaccaagaataattactatctcctaagattataggataacatgtagatgatgaaaaccttcttcagataccggacaaaag |
45391399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 321 - 621
Target Start/End: Complemental strand, 45377040 - 45376745
Alignment:
| Q |
321 |
gtccttttcaatttggtggtatcacaacatggatagtgtttgggatcaatgtaatagaaattaaggaatatatttaatttcattaagcatgtaaactaac |
420 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
45377040 |
gtccttttcaatttggtgggttcacaaaatgaatagtgtttgtgatcaatgtaatagaaattaaggaatatatttaattttgttaagcatgcaaacta-- |
45376943 |
T |
|
| Q |
421 |
tatcgaagagagcttgtatgggatgttaggacccccttccagcttatacagtaatcttgagtttgaatctatattttat----gagatcagaaataggcg |
516 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| || |
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| T |
45376942 |
--tcgaaaagagcttgtatgggatgttaggactcccttccaccttatacagtaatcttgagtttgaatctatatttaattttagagatcagaaatc--cg |
45376847 |
T |
|
| Q |
517 |
tctcagttgaggacctgagataggtcagtgccacactaagaatatgttctactatttatggaagtcgatgagctacattctgactaccgcggcataactt |
616 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
45376846 |
tctcagttgaggatctgagataggtcactgccacactaagaatatgttctactatttatggaagttgatgagctacattct---taccgcggcataactt |
45376750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 613 - 781
Target Start/End: Complemental strand, 45376421 - 45376253
Alignment:
| Q |
613 |
acttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaactgcttgcttacagctcaacaaagaaaaccaccaagaata |
712 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45376421 |
acttaaaatctaatgccagaggttgctttggattgctatttgcagtgaggaactgataaactgcttgcttacagctcaacaaagaaaaccacaaagaata |
45376322 |
T |
|
| Q |
713 |
attactatctcctaagattataggataacatgtagatgatgaaaaccttcttcagataccggacaaaag |
781 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
45376321 |
attaccatctcctaagattatagaataacatgtagatgatgacaaccttcttcagataccagacaaaag |
45376253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 45377553 - 45377348
Alignment:
| Q |
23 |
atagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatggtatgtttgatttgtaaaag-ta |
121 |
Q |
| |
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|||||||| |||||| |||||| ||||||||| | || || |||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||| || |
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| T |
45377553 |
atagaattaactgctcatccaagtatgttctactatttatggaagttgatggtctgattatcacggcatagcttatggtatgtttgatttgcaaaagata |
45377454 |
T |
|
| Q |
122 |
agtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacctaacccaaatgactagtcaatta |
221 |
Q |
| |
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|||||||||||| ||||||||||| | | || ||||| | ||||||||| |||||||| || |||||||| |||||||| ||||||| ||||||||||| |
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| T |
45377453 |
agtgtttgattcatgtatctgagtcagttactcggtcaaatctaaatattactatgactcaagaccttgaaaagacctaaaccaaatgtctagtcaatta |
45377354 |
T |
|
| Q |
222 |
agtggt |
227 |
Q |
| |
|
||||| |
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|
| T |
45377353 |
ggtggt |
45377348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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