View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5161_high_12 (Length: 267)
Name: NF5161_high_12
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 42476171 - 42476410
Alignment:
| Q |
18 |
aattagttgaatctgaactcgagtcagagttctatttcttatatggtattgttgagttttgaatcacaattaggattttagaattatgaagttttattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42476171 |
aattagttgaatctgaactcgagtcagagttctatttcttatatggtattgttgagttttgaatcacaattaggattttagaattatgaagttttattta |
42476270 |
T |
|
| Q |
118 |
ttgttatgttagtcatcgtaaccatgtggtaacaaacacttggaacttaattgatgtccttaaatattttactatattcagattttaatagcaaactttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42476271 |
ttgttatgttagtcatcgtaaccatgtggtaacaaacacttggaacttaattgatgtccttaaattttttactatattcagattttaatagcaaactttt |
42476370 |
T |
|
| Q |
218 |
tcatttattacaaatttgaattcaatcggtccaattcatt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42476371 |
tcatttattacaaatttgaattcaatcggtccaattcatt |
42476410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University