View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161_high_13 (Length: 261)

Name: NF5161_high_13
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161_high_13
NF5161_high_13
[»] scaffold0793 (1 HSPs)
scaffold0793 (18-248)||(5268-5498)
[»] chr4 (2 HSPs)
chr4 (18-248)||(753318-753548)
chr4 (18-227)||(727308-727517)


Alignment Details
Target: scaffold0793 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 5498 - 5268
Alignment:
Q  18 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5498 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 5399  T
Q  118 tgaatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggat 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5398 tgaatatgcacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggat 5299  T
Q  218 gagcttccgctcttttgctttctctgctcct 248  Q
    |||||||||||||||||||||||||| ||||    
T  5298 gagcttccgctcttttgctttctctgatcct 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 753548 - 753318
Alignment:
Q  18 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753548 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 753449  T
Q  118 tgaatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggat 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  753448 tgaatatgcacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggat 753349  T
Q  218 gagcttccgctcttttgctttctctgctcct 248  Q
    |||||||||||||||||||||||||| ||||    
T  753348 gagcttccgctcttttgctttctctgatcct 753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 727308 - 727517
Alignment:
Q  18 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  727308 ggaggtaccaactacttcatgggattcccttcgcaaacaggtttcaattaattttctctcattctcatgttttttatgttgtaaattatgctaattgata 727407  T
Q  118 tgaatatgtacaatttgaatccccatgtgttaaagtttcgatttttctttctggggttttctcaatttgtctgtgacggggaaggaatttatcattggat 217  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  727408 tgaatatgcacaatttgaatccccatgtgttaaagtttcgatttttatttatggggttttatcaatttgtatgtgacggggaaggaatttatcattggat 727507  T
Q  218 gagcttccgc 227  Q
    ||||||||||    
T  727508 gagcttccgc 727517  T

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