View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_high_19 (Length: 219)
Name: NF5161_high_19
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 37984871 - 37984680
Alignment:
| Q |
12 |
ggtagaaagagtgagnnnnnnncatcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataag |
111 |
Q |
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| T |
37984871 |
ggtagaaagagtgagaaaaaaacatcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataag |
37984772 |
T |
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| Q |
112 |
aacctcttgtggatttttatgattaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgt |
203 |
Q |
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| T |
37984771 |
aacctcttgtggatttttatgatcaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgt |
37984680 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 28007140 - 28007085
Alignment:
| Q |
50 |
atactagaatggaagaca----aataccaaagaacagaaccaacagtgtaagacat |
101 |
Q |
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| T |
28007140 |
atactagaatggaagacattcaaatgccaaagaacagaaccaacagtgtaagacat |
28007085 |
T |
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