View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_high_20 (Length: 215)
Name: NF5161_high_20
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 37984849 - 37984680
Alignment:
| Q |
30 |
catcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataagaacctcttgtggatttttatga |
129 |
Q |
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| T |
37984849 |
catcataaatactagaatactagaatggaagacaaataccaaagaacagaaccaacagtgtaagacattaaaaataagaacctcttgtggatttttatga |
37984750 |
T |
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| Q |
130 |
ttaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgt |
199 |
Q |
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| T |
37984749 |
tcaaaattctaagtcattttgctctcaagtgaaagcttctttcaaaagtttctattttgggtttatatgt |
37984680 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 28007140 - 28007085
Alignment:
| Q |
46 |
atactagaatggaagaca----aataccaaagaacagaaccaacagtgtaagacat |
97 |
Q |
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| T |
28007140 |
atactagaatggaagacattcaaatgccaaagaacagaaccaacagtgtaagacat |
28007085 |
T |
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