View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_high_4 (Length: 394)
Name: NF5161_high_4
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 381
Target Start/End: Original strand, 10152860 - 10153196
Alignment:
| Q |
46 |
tcttcataaatatataactagaactttaatctataatcaagaggttgggtctggtgcaaagattgggtcaaataaaataacgtgactctcagattatcgt |
145 |
Q |
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| T |
10152860 |
tcttcataaatatataactagaactttgatctataatcaagaggttgggtctggtgcaaagattgggtcaaatagaataacgtgactctcagattattgt |
10152959 |
T |
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| Q |
146 |
gataaatttatgttctaatttcgatcaagagaagtaacattgacgaaaagatttatcacacaaaaagagtac-tgccaagagttttgatagagaagaaga |
244 |
Q |
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| T |
10152960 |
gataaattaatgttctaatttcgatcaagagaagtaacattgacgaaaagatttatcacataaaaagagtacttgccaatagttttgatagagaagaaga |
10153059 |
T |
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| Q |
245 |
tttcttgaaattcaaattgattgatnnnnnnntagtcaattagcacaaagaatgccctatgaagggaggagattataagtcttatttatcatgttttctc |
344 |
Q |
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| T |
10153060 |
tttcttgaaattcaaattgattgataaaaaaataatcaattagcacaaagaatgccctatgaagggaggagattataagtcttatttatcatgttttctc |
10153159 |
T |
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| Q |
345 |
aattggagatattttcacccttaaatccatttatata |
381 |
Q |
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| T |
10153160 |
aattggagatattttcaccgttaaatccatttatata |
10153196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 10152793 - 10152840
Alignment:
| Q |
13 |
aatatcatgtggcacacttaatatataatcaaatcttcataaatatat |
60 |
Q |
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| T |
10152793 |
aatatcatgtggcacacttaatatataatcaaatcttcataaatatat |
10152840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 32367886 - 32367931
Alignment:
| Q |
333 |
tcatgttttctcaattggagatattttcacccttaaatccatttat |
378 |
Q |
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| T |
32367886 |
tcatgttttctcaattgaagagatttccacccttaaatccgtttat |
32367931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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