View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_high_5 (Length: 382)
Name: NF5161_high_5
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 28235815 - 28236167
Alignment:
| Q |
14 |
gagatcaggattcaaagtctcaaacggccaaacaacataagtaacattgataattttatcttattgtattcttgggttcgggatatagtatcattcacca |
113 |
Q |
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| T |
28235815 |
gagatcaggattcaaagtctcaaacggccaaacaacataagtaacattgataattttatcttattgtattcttgggttcaagatatagtatcattcacca |
28235914 |
T |
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| Q |
114 |
caagtttccctctagctagggttcacagtagcaaccttattagggtgggaattcaaaatatataaggtacattgttcccttgaacttgggcatgtcttga |
213 |
Q |
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| T |
28235915 |
caagtttccctctagctagggttcacagtagcaaccttattagggtcggaattcaaaatatataaggtacattgttcccttgaacctgggcatgtcttga |
28236014 |
T |
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| Q |
214 |
ttgtggcattatacattggctctacgtacaagcaatatttgtttgactttgataccctgttggccttgtagaactgatgtagccaaagtgtcccaagaaa |
313 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28236015 |
ttgttgcattatacattggttctacgtacaagcaatatttgtttaactttgataccctgttggccttgtacaactgatgtagccaaagtgtcccaagaaa |
28236114 |
T |
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| Q |
314 |
tggcgttaat-gattccaattccctagcctgctggaccttatttatcaaccata |
366 |
Q |
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||||||||| |||||||||| ||||| ||||||||||| | |||||||||||| |
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| T |
28236115 |
gggcgttaatggattccaattacctagtctgctggacctca-ttatcaaccata |
28236167 |
T |
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