View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_low_12 (Length: 274)
Name: NF5161_low_12
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 31102823 - 31102571
Alignment:
| Q |
18 |
aacaatgcctcccagccatcttgctacatcatatgattgatatgatgactgctattggattagcctgtgtgatcattacacagatgaaaggaaagacaag |
117 |
Q |
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| T |
31102823 |
aacaatgcctcccagccatcttgctacatcatatgattgacatgatgactgctattggattagcctgtgtgatcattacacagatgaaaggaaagacaag |
31102724 |
T |
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| Q |
118 |
cctccatctacctcctacacccgatcctcccttcttatctttccttacaattaagcaacgtaacccaggaattctgtagcttgcaatatgatcgatctgt |
217 |
Q |
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| T |
31102723 |
cctccatctacctcctacacccgatcctcccttcttatctttccttacaattaagcaacgtaacacaggaattctgtagcttgcaatatgattgatctgt |
31102624 |
T |
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| Q |
218 |
gacaaatagaattaagaaaccttcctcatatgttacatgtgcctatgcttctc |
270 |
Q |
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| T |
31102623 |
gaccaatagaattaagaaaccttcctcatatgttacatgtgcctgtgattctc |
31102571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 31138249 - 31138354
Alignment:
| Q |
165 |
caattaagcaacgtaacccaggaattctgtagcttgcaatatgatcgatctgtgacaaatagaattaagaaaccttcctcatatgttacatgtgcctatg |
264 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
31138249 |
caattaagcaacgtaacacaggaattctgtagcttgcaatatgatcgatctgtgaccaatagaattaagaaaccttcctcatatgttacatgtgcctgtg |
31138348 |
T |
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| Q |
265 |
cttctc |
270 |
Q |
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| T |
31138349 |
attctc |
31138354 |
T |
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