View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_low_17 (Length: 238)
Name: NF5161_low_17
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 34814627 - 34814414
Alignment:
| Q |
7 |
agagagatgaatccaaaattgcaagtacacttgaaaggattgctaaactaatgcaaactccgaaactgaaacttggtacaattacaacctttgcttgcct |
106 |
Q |
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| T |
34814627 |
agagaaatgaatccaaaattgcaagtacacttgaaaggattgctgaactactgcaaactccgaaactgaaacttggtacaattacaacctttgtttgcct |
34814528 |
T |
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| Q |
107 |
cttagatatctatttttctatgatcaataaggagacatgttctatcttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagcaat |
206 |
Q |
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| T |
34814527 |
cttagatatctatttt--ttttatcaataaggagacatgttctatcttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagcaat |
34814430 |
T |
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| Q |
207 |
gtactttagtgttgga |
222 |
Q |
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|||||||||||||||| |
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| T |
34814429 |
gtactttagtgttgga |
34814414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 34815609 - 34815411
Alignment:
| Q |
7 |
agagagatgaatccaaaattgcaagtacacttgaaaggattgctaaactaatgcaaactccgaaactgaaacttggtacaattacaacctttgcttgcct |
106 |
Q |
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|||||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| || ||| | ||| || |
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| T |
34815609 |
agagagatgaatccaaaactgttggtacatttgaaaggattgctaaattaat-caaactcctaaagtgaaacttggtacaatttcatcctctatttgact |
34815511 |
T |
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| Q |
107 |
cttagatatctatttttctatgatcaataaggagacatgttctatc--ttgtactatatgtgggatccttcaattgacaaactaaggactaacttcagca |
204 |
Q |
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| T |
34815510 |
cttagatatcta-ttttct---acctataaggagacatattctatcttttgagatatgtgtgggattcttcaattgacaaactaaggactaacttcagca |
34815415 |
T |
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