View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161_low_2 (Length: 617)

Name: NF5161_low_2
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161_low_2
NF5161_low_2
[»] chr8 (9 HSPs)
chr8 (426-555)||(12021806-12021934)
chr8 (382-423)||(32110857-32110898)
chr8 (382-421)||(18175573-18175612)
chr8 (382-420)||(995814-995852)
chr8 (382-420)||(10478129-10478167)
chr8 (382-420)||(30473883-30473921)
chr8 (382-419)||(6299020-6299057)
chr8 (382-419)||(15961324-15961361)
chr8 (382-419)||(23353622-23353659)
[»] chr6 (8 HSPs)
chr6 (460-555)||(22280675-22280769)
chr6 (382-420)||(162668-162706)
chr6 (382-420)||(2266968-2267006)
chr6 (382-420)||(3593085-3593123)
chr6 (382-420)||(12597264-12597302)
chr6 (382-419)||(8539745-8539782)
chr6 (382-419)||(28099597-28099634)
chr6 (382-419)||(33646134-33646171)
[»] chr2 (9 HSPs)
chr2 (426-522)||(9067591-9067687)
chr2 (382-421)||(18351743-18351782)
chr2 (382-421)||(27944794-27944833)
chr2 (382-420)||(6120744-6120782)
chr2 (382-420)||(8700453-8700491)
chr2 (382-420)||(19596362-19596400)
chr2 (382-420)||(20545017-20545055)
chr2 (382-419)||(41664702-41664739)
chr2 (382-419)||(44902273-44902310)
[»] chr7 (13 HSPs)
chr7 (1-92)||(48601046-48601137)
chr7 (205-280)||(48601241-48601319)
chr7 (382-422)||(42242151-42242191)
chr7 (382-421)||(21804570-21804609)
chr7 (382-421)||(27903415-27903454)
chr7 (382-421)||(33916945-33916984)
chr7 (382-420)||(3840640-3840678)
chr7 (382-420)||(16376544-16376582)
chr7 (382-420)||(31373648-31373686)
chr7 (382-420)||(40969083-40969121)
chr7 (382-419)||(13786362-13786399)
chr7 (382-419)||(21342015-21342052)
chr7 (382-419)||(38163339-38163376)
[»] chr5 (11 HSPs)
chr5 (461-556)||(7376010-7376105)
chr5 (382-421)||(2398940-2398979)
chr5 (382-421)||(10729440-10729479)
chr5 (382-421)||(34107336-34107375)
chr5 (382-420)||(16526305-16526343)
chr5 (382-420)||(38246864-38246902)
chr5 (382-419)||(17373161-17373198)
chr5 (382-419)||(20655049-20655086)
chr5 (382-419)||(20874880-20874917)
chr5 (382-419)||(34110844-34110881)
chr5 (382-419)||(40177233-40177270)
[»] scaffold0022 (1 HSPs)
scaffold0022 (379-419)||(149050-149090)
[»] chr4 (10 HSPs)
chr4 (382-421)||(16904950-16904989)
chr4 (382-421)||(52434816-52434855)
chr4 (382-420)||(18209703-18209741)
chr4 (382-428)||(30824913-30824959)
chr4 (382-420)||(31965968-31966006)
chr4 (382-419)||(12090459-12090496)
chr4 (382-419)||(33139471-33139508)
chr4 (382-419)||(37590804-37590841)
chr4 (382-419)||(37651858-37651895)
chr4 (382-419)||(48118534-48118571)
[»] chr3 (15 HSPs)
chr3 (382-421)||(6460166-6460205)
chr3 (382-421)||(38653925-38653964)
chr3 (382-420)||(12264392-12264430)
chr3 (382-420)||(36076453-36076491)
chr3 (382-420)||(43363610-43363648)
chr3 (382-419)||(1941720-1941757)
chr3 (382-419)||(3898614-3898651)
chr3 (382-419)||(4584434-4584471)
chr3 (382-419)||(21098496-21098533)
chr3 (382-419)||(26948990-26949027)
chr3 (382-419)||(34121547-34121584)
chr3 (382-419)||(40014653-40014690)
chr3 (382-419)||(49672754-49672791)
chr3 (382-419)||(54073222-54073259)
chr3 (382-422)||(49506346-49506386)
[»] chr1 (12 HSPs)
chr1 (382-421)||(9216223-9216262)
chr1 (382-420)||(2590472-2590510)
chr1 (382-420)||(18855232-18855270)
chr1 (382-420)||(23482706-23482744)
chr1 (382-420)||(34888685-34888723)
chr1 (382-419)||(1231988-1232025)
chr1 (382-419)||(2951366-2951403)
chr1 (382-419)||(4266573-4266610)
chr1 (382-419)||(18706509-18706546)
chr1 (382-419)||(29942210-29942247)
chr1 (382-419)||(31018200-31018237)
chr1 (382-419)||(38913747-38913784)
[»] scaffold0031 (1 HSPs)
scaffold0031 (382-420)||(46466-46504)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 426 - 555
Target Start/End: Original strand, 12021806 - 12021934
Alignment:
Q  426 taagattgtggctaaagtcaccaagctcccctcaacttctataaccttctagaaggtgtaagagtgtaacgtgtgtgatttggacccaatcattgggcca 525  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||||||||| ||| |||||||||||    
T  12021806 taagattgtggctcaagccaccaagctcccctcagcttctataaccttctataaggtgtaagagtgtggcgtgtgtgatttgga-ccattcattgggcca 12021904  T
Q  526 tcaaactcatgggaccctagtgtcctatca 555  Q
    ||||||||||||||||||||||||||||||    
T  12021905 tcaaactcatgggaccctagtgtcctatca 12021934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 32110898 - 32110857
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagttact 423  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  32110898 tatatgacccgtgcggcagcacgggtggaaagtctagttact 32110857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 18175573 - 18175612
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  18175573 tatatgacccgtgcggcagcacgggtggaaagtctagtta 18175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 995852 - 995814
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  995852 tatatgacccgtgcggcagcacgggtggaaagtctagtt 995814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 10478129 - 10478167
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  10478129 tatatgacccgtgcggcagcacgggtggaaagtctagtt 10478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 30473921 - 30473883
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  30473921 tatatgacccgtgcggcagcacgggtggaaagtctagtt 30473883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 6299057 - 6299020
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  6299057 tatatgacccgtgcggcagcacgggtggaaagtctagt 6299020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 15961324 - 15961361
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  15961324 tatatgacccgtgcggcagcacgggtggaaagtctagt 15961361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 23353659 - 23353622
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  23353659 tatatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 460 - 555
Target Start/End: Original strand, 22280675 - 22280769
Alignment:
Q  460 acttctataaccttctagaaggtgtaagagtgtaacgtgtgtgatttggacccaatcattgggccatcaaactcatgggaccctagtgtcctatca 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22280675 acttctataaccttctagaaggtgtaagagtgtaacgtgtgtgatttggacccaatcatt-agccatcaaactcatgggaccctagtgtcctatca 22280769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 162706 - 162668
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  162706 tatatgacccgtgcggcagcacgggtggaaagtctagtt 162668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 2266968 - 2267006
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  2266968 tatatgacccgtgcggcagcacgggtggaaagtctagtt 2267006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 3593085 - 3593123
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  3593085 tatatgacccgtgcggcagcacgggtggaaagtctagtt 3593123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 12597302 - 12597264
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  12597302 tatatgacccgtgcggcagcacgggtggaaagtctagtt 12597264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 8539745 - 8539782
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  8539745 tatatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 28099634 - 28099597
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  28099634 tatatgacccgtgcggcagcacgggtggaaagtctagt 28099597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 33646134 - 33646171
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  33646134 tatatgacccgtgcggcagcacgggtggaaagtctagt 33646171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 9067687 - 9067591
Alignment:
Q  426 taagattgtggctaaagtcaccaagctcccctcaacttctataaccttctagaaggtgtaagagtgtaacgtgtgtgatttggacccaatcattggg 522  Q
    ||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9067687 taagattgtggatcaagccaccaagctcccctcagcttctataaccttctagaaggtgtaggagtgtaacgtgtgtgatttggacccaatcattggg 9067591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 18351743 - 18351782
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  18351743 tatatgacccgtgcggcagcacgggtggaaagtctagtta 18351782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 27944833 - 27944794
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  27944833 tatatgacccgtgcggcagcacgggtggaaagtctagtta 27944794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 6120744 - 6120782
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  6120744 tatatgacccgtgcggcagcacgggtggaaagtctagtt 6120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 8700453 - 8700491
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  8700453 tatatgacccgtgcggcagcacgggtggaaagtctagtt 8700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 19596400 - 19596362
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  19596400 tatatgacccgtgcggcagcacgggtggaaagtctagtt 19596362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 20545017 - 20545055
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  20545017 tatatgacccgtgcggcagcacgggtggaaagtctagtt 20545055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 41664702 - 41664739
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  41664702 tatatgacccgtgcggcagcacgggtggaaagtctagt 41664739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 44902273 - 44902310
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  44902273 tatatgacccgtgcggcagcacgggtggaaagtctagt 44902310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 48601046 - 48601137
Alignment:
Q  1 gtcctcttctccgacctcttgtttcttaaactgccggatccactgtcctcatcaccaccgttcagattcatcgcctgcacagccggtggtaa 92  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48601046 gtcctcttctccggccttttgtttcttaaactgccggatccaccgtcctcatcaccaccgttcagattcatcgcctgcacagtcggtggtaa 48601137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 48601241 - 48601319
Alignment:
Q  205 atgaaattaccaaaataccctcctat---ggtgtgtgcagaaagtggtatgggaaatggtgtttatgaaacattttcct 280  Q
    ||||||||||||||||| |||||||    ||||||| || ||||||| |||||||| |||||||||||| |||||||||    
T  48601241 atgaaattaccaaaatagcctcctagttgggtgtgtacaaaaagtggcatgggaaaaggtgtttatgaatcattttcct 48601319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 42242191 - 42242151
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagttac 422  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  42242191 tatatgacccgtgcggcagcacgggtggaaagtctagttac 42242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 21804609 - 21804570
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  21804609 tatatgacccgtgcggcagcacgggtggaaagtctagtta 21804570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 27903454 - 27903415
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  27903454 tatatgacccgtgcggcagcacgggtggaaagtctagtta 27903415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 33916984 - 33916945
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  33916984 tatatgacccgtgcggcagcacgggtggaaagtctagtta 33916945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 3840678 - 3840640
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  3840678 tatatgactcgtgcggcagcacgggtggaaagtctagtt 3840640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 16376582 - 16376544
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  16376582 tatatgacccgtgcggcagcacgggtggaaagtctagtt 16376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 31373648 - 31373686
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  31373648 tatatgacccgtgcggcagcacgggtggaaagtctagtt 31373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 40969083 - 40969121
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  40969083 tatatgacccgtgcggcagcacgggtggaaagtctagtt 40969121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 13786362 - 13786399
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  13786362 tatatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 21342015 - 21342052
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  21342015 tatatgacccgtgcggcagcacgggtggaaagtctagt 21342052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 38163376 - 38163339
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  38163376 tatatgacccgtgcggcagcacgggtggaaagtctagt 38163339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 556
Target Start/End: Complemental strand, 7376105 - 7376010
Alignment:
Q  461 cttctataaccttctagaaggtgtaagagtgtaacgtgtgtgatttggacccaatcattgggccatcaaactcatgggaccctagtgtcctatcag 556  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  7376105 cttctataaccttctagaaggtgtaagtgtgtgacatgtgtgatttggacccaattattgggccatcaaacctatgggaccctagtgtcctatcag 7376010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 2398979 - 2398940
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  2398979 tatatgacccgtgcggcagcacgggtggaaagtctagtta 2398940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 10729479 - 10729440
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  10729479 tatatgacccgtgcggcagcacgggtggaaagtctagtta 10729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 34107375 - 34107336
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  34107375 tatatgacccgtgcggcagcacgggtggaaagtctagtta 34107336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 16526343 - 16526305
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  16526343 tatatgacccgtgcggcagcacgggtggaaagtctagtt 16526305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 38246902 - 38246864
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  38246902 tatatgacccgtgcggcagcacgggtggaaagtctagtt 38246864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 17373198 - 17373161
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  17373198 tatatgacccgtgcggcagcacgggtggaaagtctagt 17373161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 20655086 - 20655049
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  20655086 tatatgacccgtgcggcagcacgggtggaaagtctagt 20655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 20874880 - 20874917
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  20874880 tatatgacccgtgcggcagcacgggtggaaagtctagt 20874917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 34110844 - 34110881
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  34110844 tatatgacccgtgcggcagcacgggtggaaagtctagt 34110881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 40177233 - 40177270
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  40177233 tatatgacccgtgcggcagcacgggtggaaagtctagt 40177270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 149090 - 149050
Alignment:
Q  379 atttatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  149090 atttatatgacccgtgcggcagcacgggtggaaagtctagt 149050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 16904989 - 16904950
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  16904989 tatatgacccgtgcggcagcacgggtggaaagtctagtta 16904950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 52434816 - 52434855
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  52434816 tatatgacccgtgcggcagcacgggtggaaagtctagtta 52434855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 18209703 - 18209741
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  18209703 tatatgacccgtgcggcagcacgggtggaaagtctagtt 18209741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 30824959 - 30824913
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagttacttataa 428  Q
    |||||||| ||||||||||||||||| ||||||||||| ||| ||||    
T  30824959 tatatgacccgtgcggcagcacgggtggaaagtctagtaactaataa 30824913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 31966006 - 31965968
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  31966006 tatatgacccgtgcggcagcacgggtggaaagtctagtt 31965968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 12090496 - 12090459
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12090496 tatatgacccgtgcggcagcacgggtggaaagtctagt 12090459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 33139508 - 33139471
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  33139508 tatatgacccgtgcggcagcacgggtggaaagtctagt 33139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 37590841 - 37590804
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  37590841 tatatgacccgtgcggcagcacgggtggaaagtctagt 37590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 37651858 - 37651895
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  37651858 tatatgacccgtgcggcagcacgggtggaaagtctagt 37651895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 48118571 - 48118534
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  48118571 tatatgactcgtgcggcagcacgggtggaaagtctagt 48118534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 6460205 - 6460166
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  6460205 tatatgacccgtgcggcagcacgggtggaaagtctagtta 6460166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 38653964 - 38653925
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  38653964 tatatgacccgtgcggcagcacgggtggaaagtctagtta 38653925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 12264392 - 12264430
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  12264392 tatatgacccgtgcggcagcacgggtggaaagtctagtt 12264430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 36076491 - 36076453
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  36076491 tatatgacccgtgcggcagcacgggtggaaagtctagtt 36076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 43363648 - 43363610
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  43363648 tatatgacccgtgcggcagcacgggtggaaagtctagtt 43363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 1941757 - 1941720
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  1941757 tatatgacccgtgcggcagcacgggtggaaagtctagt 1941720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 3898614 - 3898651
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  3898614 tatatgacccgtgcggcagcacgggtggaaagtctagt 3898651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 4584471 - 4584434
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  4584471 tatatgacccgtgcggcagcacgggtggaaagtctagt 4584434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 21098496 - 21098533
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  21098496 tatatgacccgtgcggcagcacgggtggaaagtctagt 21098533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 26948990 - 26949027
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  26948990 tatatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 34121547 - 34121584
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  34121547 tatatgacccgtgcggcagcacgggtggaaagtctagt 34121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 40014690 - 40014653
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  40014690 tatatgacccgtgcggcagcacgggtggaaagtctagt 40014653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 49672754 - 49672791
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  49672754 tatatgacccgtgcggcagcacgggtggaaagtctagt 49672791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 54073222 - 54073259
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  54073222 tatatgacccgtgcggcagcacgggtggaaagtctagt 54073259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 49506386 - 49506346
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagttac 422  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  49506386 tatatgacccgtgcggcagtacgggtggaaagtctagttac 49506346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 9216223 - 9216262
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtta 421  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  9216223 tatatgacccgtgcggcagcacgggtggaaagtctagtta 9216262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 2590472 - 2590510
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  2590472 tatatgactcgtgcggcagcacgggtggaaagtctagtt 2590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 18855270 - 18855232
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  18855270 tatatgacccgtgcggcagcacgggtggaaagtctagtt 18855232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 23482744 - 23482706
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  23482744 tatatgactcgtgcggcagcacgggtggaaagtctagtt 23482706  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 34888723 - 34888685
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  34888723 tatatgacccgtgcggcagcacgggtggaaagtctagtt 34888685  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 1231988 - 1232025
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  1231988 tatatgacccgtgcggcagcacgggtggaaagtctagt 1232025  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 2951403 - 2951366
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  2951403 tatatgacccgtgcggcagcacgggtggaaagtctagt 2951366  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 4266573 - 4266610
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  4266573 tatatgacccgtgcggcagcacgggtggaaagtctagt 4266610  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 18706546 - 18706509
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  18706546 tatatgactcgtgcggcagcacgggtggaaagtctagt 18706509  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 29942210 - 29942247
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  29942210 tatatgacccgtgcggcagcacgggtggaaagtctagt 29942247  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 31018237 - 31018200
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  31018237 tatatgacccgtgcggcagcacgggtggaaagtctagt 31018200  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 38913784 - 38913747
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagt 419  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  38913784 tatatgacccgtgcggcagcacgggtggaaagtctagt 38913747  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Original strand, 46466 - 46504
Alignment:
Q  382 tatatgacgcgtgcggcagcacgggtcgaaagtctagtt 420  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  46466 tatatgacccgtgcggcagcacgggtggaaagtctagtt 46504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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