View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5161_low_3 (Length: 416)
Name: NF5161_low_3
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5161_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 24813669 - 24813283
Alignment:
| Q |
19 |
attttgtgctcaagaatttgcacttcaaatataaaaatgcacaccaaaaaagtgctattttggaccagtttaagacaccattttccttaaatattcagat |
118 |
Q |
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| T |
24813669 |
attttgtgctcaagaatttgcacttcaaatataaaaatgcacaccaaaaaagtgctattttggaccagtttaagacaccattttccttaaatattcagat |
24813570 |
T |
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| Q |
119 |
tataacaaaatcattacaaggaagatacttcaatctccttctc-ttcaaatcaacctataagcttataaggaatatacacacaaagttcttaatttttgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813569 |
tataacaaaatcattacaaggaagatacttcaatctccttctcattcaaatcaacctataagcttataaggaatatacacacaaagttcttaatttttgt |
24813470 |
T |
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| Q |
218 |
gtatgttacttcatcagcaaaaccataaggttattttcattatcactatttttcttaagtgcctcacacatcataaagattcatagtatctattatttat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24813469 |
gtatgttacttcatcagcaaaaccataaggttattttcattatcactatttttcttaagtgcctcacacatcataaagattcatagtatctatcatttat |
24813370 |
T |
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| Q |
318 |
ttgtttgttaagatttgatatttttgtaagtgagattatggaagagtcatcaaatcttacatatagttgaaattgttgtaggagtat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813369 |
ttgtttgttaagatttgatatttttgtaagtgagattatggaagagtcatcaaatcttacatatagttgaaattgttgtaggagtat |
24813283 |
T |
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