View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5161_low_7 (Length: 379)

Name: NF5161_low_7
Description: NF5161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5161_low_7
NF5161_low_7
[»] chr6 (8 HSPs)
chr6 (17-271)||(21389021-21389281)
chr6 (49-270)||(7789709-7789933)
chr6 (180-270)||(33022341-33022431)
chr6 (194-271)||(33022164-33022241)
chr6 (194-268)||(21389209-21389282)
chr6 (181-270)||(28472535-28472624)
chr6 (189-260)||(7789678-7789748)
chr6 (181-270)||(29859723-29859813)
[»] chr3 (14 HSPs)
chr3 (17-272)||(36635242-36635503)
chr3 (87-271)||(19580387-19580574)
chr3 (160-272)||(11650999-11651111)
chr3 (180-273)||(27073081-27073174)
chr3 (180-271)||(33214443-33214534)
chr3 (180-264)||(36274126-36274210)
chr3 (194-273)||(33219070-33219149)
chr3 (194-271)||(33214626-33214703)
chr3 (194-269)||(10598810-10598885)
chr3 (203-268)||(36635241-36635305)
chr3 (210-271)||(27072913-27072974)
chr3 (194-271)||(36274312-36274389)
chr3 (209-271)||(10599000-10599062)
chr3 (160-190)||(11651187-11651217)
[»] chr8 (13 HSPs)
chr8 (17-271)||(14193324-14193584)
chr8 (17-272)||(2814247-2814509)
chr8 (87-271)||(397084-397269)
chr8 (17-271)||(41539770-41540030)
chr8 (180-271)||(37994881-37994972)
chr8 (194-272)||(14193512-14193589)
chr8 (203-271)||(41539967-41540034)
chr8 (203-271)||(2814243-2814310)
chr8 (194-272)||(37994707-37994785)
chr8 (180-255)||(25101746-25101821)
chr8 (202-272)||(397006-397075)
chr8 (194-271)||(44036814-44036891)
chr8 (208-272)||(40587991-40588055)
[»] chr1 (27 HSPs)
chr1 (22-271)||(23346419-23346675)
chr1 (17-272)||(50892962-50893222)
chr1 (49-270)||(39669099-39669321)
chr1 (17-240)||(7062038-7062256)
chr1 (17-272)||(41833873-41834135)
chr1 (17-240)||(42180575-42180805)
chr1 (49-271)||(28217572-28217783)
chr1 (17-273)||(48871251-48871503)
chr1 (17-223)||(4156896-4157109)
chr1 (161-270)||(50904992-50905103)
chr1 (180-272)||(10227711-10227803)
chr1 (180-273)||(26552165-26552258)
chr1 (205-271)||(10227910-10227976)
chr1 (194-271)||(7062184-7062260)
chr1 (194-267)||(19059378-19059451)
chr1 (203-271)||(48752590-48752657)
chr1 (203-273)||(42180569-42180638)
chr1 (205-271)||(48871247-48871312)
chr1 (205-271)||(50893161-50893226)
chr1 (194-271)||(28217530-28217606)
chr1 (194-274)||(4156889-4156968)
chr1 (180-263)||(19059551-19059634)
chr1 (203-270)||(50905108-50905175)
chr1 (203-272)||(41834072-41834140)
chr1 (206-262)||(23346620-23346675)
chr1 (17-135)||(48752532-48752653)
chr1 (194-269)||(26551992-26552067)
[»] chr4 (13 HSPs)
chr4 (49-271)||(37177666-37177890)
chr4 (49-271)||(18936718-18936941)
chr4 (49-271)||(11147014-11147246)
chr4 (180-274)||(3102713-3102807)
chr4 (180-271)||(40534136-40534227)
chr4 (186-271)||(18381488-18381573)
chr4 (194-271)||(40533963-40534040)
chr4 (205-271)||(5121005-5121071)
chr4 (194-271)||(3102540-3102617)
chr4 (194-270)||(13690216-13690292)
chr4 (194-272)||(9231579-9231657)
chr4 (194-271)||(18936676-18936752)
chr4 (180-252)||(9231753-9231825)
[»] chr7 (14 HSPs)
chr7 (17-272)||(7298634-7298896)
chr7 (17-272)||(40521020-40521281)
chr7 (17-245)||(46567961-46568196)
chr7 (17-195)||(16979492-16979677)
chr7 (17-178)||(28948893-28949065)
chr7 (194-271)||(28948993-28949069)
chr7 (203-271)||(7298833-7298900)
chr7 (203-271)||(40521016-40521083)
chr7 (180-271)||(19805587-19805678)
chr7 (87-182)||(47478434-47478532)
chr7 (194-272)||(16979605-16979682)
chr7 (203-268)||(46567960-46568024)
chr7 (205-272)||(19804796-19804863)
chr7 (216-265)||(47478367-47478415)
[»] chr5 (35 HSPs)
chr5 (17-268)||(35454455-35454710)
chr5 (17-271)||(5146508-5146767)
chr5 (17-272)||(6518202-6518462)
chr5 (17-271)||(13823154-13823412)
chr5 (87-272)||(33377723-33377913)
chr5 (102-271)||(228717-228889)
chr5 (160-271)||(8489123-8489234)
chr5 (160-273)||(40881790-40881901)
chr5 (101-254)||(40881912-40882066)
chr5 (179-272)||(19898926-19899019)
chr5 (180-271)||(791592-791683)
chr5 (180-271)||(26534671-26534762)
chr5 (180-269)||(8323881-8323970)
chr5 (87-256)||(27319556-27319716)
chr5 (180-273)||(130421-130514)
chr5 (194-271)||(5146504-5146580)
chr5 (17-143)||(19897229-19897359)
chr5 (203-275)||(14388516-14388587)
chr5 (203-275)||(19897221-19897292)
chr5 (194-274)||(35454448-35454527)
chr5 (194-271)||(26534506-26534583)
chr5 (194-274)||(8323704-8323784)
chr5 (203-271)||(14069861-14069928)
chr5 (180-268)||(42630880-42630968)
chr5 (194-271)||(130254-130331)
chr5 (194-271)||(42630711-42630788)
chr5 (272-323)||(1276060-1276111)
chr5 (214-274)||(791810-791870)
chr5 (208-271)||(6518404-6518466)
chr5 (210-268)||(228987-229044)
chr5 (203-271)||(13823150-13823217)
chr5 (199-268)||(27319482-27319550)
chr5 (87-143)||(228901-228957)
chr5 (194-230)||(33377686-33377722)
chr5 (161-201)||(42681824-42681864)
[»] chr2 (22 HSPs)
chr2 (17-271)||(38085971-38086231)
chr2 (17-271)||(3671825-3672087)
chr2 (17-273)||(31470585-31470837)
chr2 (180-272)||(42028577-42028669)
chr2 (189-271)||(15332844-15332926)
chr2 (180-274)||(16115043-16115137)
chr2 (180-271)||(13280008-13280099)
chr2 (180-271)||(2059657-2059748)
chr2 (180-271)||(7317808-7317899)
chr2 (180-271)||(31860258-31860349)
chr2 (194-271)||(16115231-16115308)
chr2 (203-271)||(36059283-36059351)
chr2 (194-273)||(42028765-42028844)
chr2 (205-270)||(3671822-3671886)
chr2 (194-271)||(31860079-31860156)
chr2 (203-271)||(38085967-38086034)
chr2 (205-271)||(31470776-31470841)
chr2 (194-271)||(7317635-7317712)
chr2 (210-273)||(13279838-13279901)
chr2 (194-271)||(2059490-2059567)
chr2 (112-192)||(15330502-15330586)
chr2 (214-271)||(15330449-15330505)
[»] scaffold0140 (2 HSPs)
scaffold0140 (17-200)||(15851-16044)
scaffold0140 (189-271)||(15847-15929)
[»] scaffold0214 (2 HSPs)
scaffold0214 (180-273)||(11624-11717)
scaffold0214 (194-272)||(11814-11892)
[»] scaffold0135 (2 HSPs)
scaffold0135 (194-272)||(37445-37523)
scaffold0135 (180-252)||(37619-37691)
[»] scaffold0204 (1 HSPs)
scaffold0204 (210-273)||(17556-17618)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 21389281 - 21389021
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| |||||| |||||||||| |||||   ||||| |||||||||||||    
T  21389281 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttttttctt---ttaaccatgattggtggtg 21389185  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagcatt-atttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||||||||||||||||||||  ||| |||||| ||||  ||||||||||||||||||| |||||||||||||||||||||| ||||     
T  21389184 gtgaatactaactgcaaataatggttgagagagaggaggagcatttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgta 21389085  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||    
T  21389084 tcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 49 - 270
Target Start/End: Original strand, 7789709 - 7789933
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gag 146  Q
    |||||||||||||||| |||||| |||||| ||| || |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||  |||    
T  7789709 aaacaacaaattaaaacatgacatgtcattgtttttttttcttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggag 7789808  T
Q  147 aagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgtta 245  Q
     |||| ||||||   |||||||||||||||||| |||||||||  || |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7789809 gagcaattattttttatttcttaaattatttcctaattattttttaaaaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 7789908  T
Q  246 ggttcgttcctacacaaaaatttct 270  Q
    ||||| ||||||||||| |||||||    
T  7789909 ggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 33022341 - 33022431
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  33022341 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 33022241 - 33022164
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  33022241 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 21389209 - 21389282
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  21389209 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 28472535 - 28472624
Alignment:
Q  181 attattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    |||||||||||| |||| |||||||||| ||| ||||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||    
T  28472535 attattttaaaagaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 7789748 - 7789678
Alignment:
Q  189 aaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacac 260  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7789748 aaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 29859723 - 29859813
Alignment:
Q  181 attattttaaaataaaacaa-taacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    |||||||||||| |||| || |||||||| ||| ||||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||    
T  29859723 attattttaaaagaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 36635242 - 36635503
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| |||||| || ||||||| ||  ||||||||| |||||||||||||    
T  36635242 aattcttgtgtaggaacgaacctaactatcattgttacaaacaacaaattaaaacatgacacgt-attttttttt--tcttttaaccatgattggtggtg 36635338  T
Q  111 gtaaatactatctgcaaataatggttgaga--gaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || |||||||  ||||||||||||||||||  ||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  36635339 gtgaatactaagtgcaaataatggttgagaaagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 36635438  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  36635439 tcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctca 36635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 19580387 - 19580574
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaatt 183  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||  ||| |||| || |||  |||||||||||||||||  |||||    
T  19580387 ttcttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttgtttttcatttcttaaattattttaaaatt 19580486  T
Q  184 attttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  19580487 attttaaaataaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 11651111 - 11650999
Alignment:
Q  160 catttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||| |  | |||| |||||| ||||||||||||||||||||| ||||||||||||| || |    
T  11651111 catttcttaaattatttccaaattattttaaaataaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaa 11651012  T
Q  260 caaaaatttctca 272  Q
    ||| |||||||||    
T  11651011 caagaatttctca 11650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 27073081 - 27073174
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  27073081 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 27073174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 33214534 - 33214443
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  33214534 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 36274210 - 36274126
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaa 264  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  36274210 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaaaa 36274126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 33219149 - 33219070
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    |||||||| |||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  33219149 aaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 33219070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 33214626 - 33214703
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||    
T  33214626 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 10598885 - 10598810
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttc 269  Q
    |||||||  ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||    
T  10598885 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 27072974 - 27072913
Alignment:
Q  210 atgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 36274312 - 36274389
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  ||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||| || ||||||||    
T  36274312 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  209 catgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| | |||||| ||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 11651187 - 11651217
Alignment:
Q  160 catttcttaaattatttccaaattattttaa 190  Q
    |||||||||||||||||||||||||||||||    
T  11651187 catttcttaaattatttccaaattattttaa 11651217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 14193584 - 14193324
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| |||||| ||||||||||  |||||||||||| |||||||||||||    
T  14193584 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttt--tcttcttttaaccatgattggtggtg 14193487  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||||||||||||||||||||  ||| | || ||||||  |||||||||||||||||||||||||||||||||||||||||| | |||    
T  14193486 gtgaatactaactgcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatgatgtg 14193387  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  14193386 tcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 2814247 - 2814509
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||  |||||| ||| |||||| ||  ||||||||| |||||||||||||    
T  2814247 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaatcatgacacgtcgttttttttt--tcttttaaccatgattggtggtg 2814344  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| | ||||||||||||||||||||  ||| |||| ||||||  ||||||||||||||||||| ||||||||| ||| |||||||| |||||    
T  2814345 gtgaatactaaccgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttcctaattatttttaaaaaaaacaatgacgtg 2814444  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  2814445 tcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 2814509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 397084 - 397269
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagaggagaagca-ttatttcacatttcttaaattatttccaaattat 185  Q
    |||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| ||||||    
T  397084 ttcttttaaccatgattggtggtggtgaatactaaccgcaaataatggttgagagaggaggagcagttatttttcatttcttaaattatttcctaattat 397183  T
Q  186 tttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  397184 tttaaaataaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 41540030 - 41539770
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| |||||| ||| |||| | |||||   ||||  |||||||||||||    
T  41540030 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcgttttattttctt---ttaatcatgattggtggtg 41539934  T
Q  111 gtaaatactatctgcaaataatggttgagagaggagaagca----ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgt 206  Q
    || ||||||| |||||||||||||||||||||| ||||| |    ||||||  |||||||||||||||||| ||||||||||||||||||||||  ||||    
T  41539933 gtgaatactaactgcaaataatggttgagagag-agaaggaacagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaacgacgt 41539835  T
Q  207 gtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  41539834 gtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 37994881 - 37994972
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  37994881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 14193512 - 14193589
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctca 14193589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 41539967 - 41540034
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  41539967 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 2814310 - 2814243
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2814310 acgtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 37994785 - 37994707
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||  |||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  37994785 aaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 37994707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 25101821 - 25101746
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcc 255  Q
    ||||||||||||| ||||||| || ||||||| ||||| ||||||||||| |||||||||| ||||||||||||||    
T  25101821 aattattttaaaagaaaacaacaatgtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 397075 - 397006
Alignment:
Q  202 aacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  397075 aacgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctca 397006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 44036891 - 44036814
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  ||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||||||  ||||||||    
T  44036891 aaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 40587991 - 40588055
Alignment:
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||| ||| ||| |||||||  |||  ||||||||||||| | |||||||||    
T  40587991 tcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctca 40588055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 23346675 - 23346419
Alignment:
Q  22 ttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtggtaaa 115  Q
    |||||||||||||||||||||| | ||      |||||| ||||||||| |||||| |||||||||| ||  ||||||||| ||||||||||||||| ||    
T  23346675 ttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacatgtcattttttttt--tcttttaaccatgattggtggtggtgaa 23346578  T
Q  116 tactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatg 212  Q
    ||||| ||||||||||||||||||||||  ||| |||| ||||||  |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  23346577 tactaactgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttccaaattattttaaaataaaaaaatgacgtgtcatg 23346478  T
Q  213 ttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  23346477 ttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 50893222 - 50892962
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| ||||||  |||||||||    |||||||||| ||||||| |||||    
T  50893222 aattcttgtgtaggaacgaacctaactatcattattacaaacaacaaattaaaacatgacacatcatttttt----ttcttttaaccatgattgatggtg 50893127  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| | ||||||||||||||||||||  |||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  50893126 gtgaatactaaccgcaaataatggttgagagagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 50893027  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  50893026 tcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctca 50892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 49 - 270
Target Start/End: Original strand, 39669099 - 39669321
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaacta----tgattggtggtggtaaatactatctgcaaataatggttgagagagg 144  Q
    |||||| |||||||||||||| | ||||||||||    |||||||||| |    |||||| ||||||| |||| || | |||||||||||||||||||||    
T  39669099 aaacaataaattaaaatatgatacgtcatttttt----ttcttttaaccatgattgattgatggtggtgaatattaaccgcaaataatggttgagagagg 39669194  T
Q  145 agaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgt 243  Q
    || |||| ||||||  |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  39669195 aggagcagttatttttcatttcctaaattatttcctaattattttaaaataaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgt 39669294  T
Q  244 taggttcgttcctacacaaaaatttct 270  Q
    || ||||||| |||||||| |||||||    
T  39669295 taagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 7062256 - 7062038
Alignment:
Q  17 aattcttgtgtaggaacgaacctaact------tttataaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||| ||||||||||||||||||||||      |||| ||||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |||||    
T  7062256 aatttttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaatatgacacgtcattttttttt-ttcttttaaccatgattgatggtg 7062158  T
Q  111 gtaaatactatctgcaaataatggttgagagaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtc 209  Q
    || ||||||| ||||||||||||||||||||||||| |||| ||||||  ||||||||           ||||||||||||||||||||||| |||||||    
T  7062157 gtgaatactaactgcaaataatggttgagagaggaggagcagttatttttcatttctt-----------aaattattttaaaataaaacaatgacgtgtc 7062069  T
Q  210 atgttttaatttgttgtttgtaagaatgata 240  Q
    |||||||||||||||||||||||||||||||    
T  7062068 atgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 41834135 - 41833873
Alignment:
Q  17 aattcttgtgtaggaacgaacctaactt------ttataaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||| |||||       ||| |||||||||||||||| |||||| ||||| |||| || ||  |||||| ||||||| |  ||    
T  41834135 aattcttgtgtaggaacgaacataactagcattattacaaacaacaaattaaaacatgacacgtcatatttttttttt--tttaaccatgattgataatg 41834038  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||  ||||||||||||||||||||||  ||| |||| ||||||  ||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  41834037 gtgaatactgactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcctaattattttaaaataaaataatgacgtg 41833938  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||| |||||||||||||  |||| |||||| ||| |||| |||||||||    
T  41833937 tcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctca 41833873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 42180575 - 42180805
Alignment:
Q  17 aattcttgtgtaggaacgaacctaactt------ttataaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||| |||||| ||||| |||| ||  ||||||||| ||||||||| |||    
T  42180575 aattcttgtgtaggaacgaacctaactagcattattacaaacaacaaattaaaacatgacacgtcatattttttt--tcttttaaccatgattggtagtg 42180672  T
Q  111 gtaaatactatctgcaaataatggttgagaga--ggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||  | |||||||||||||||||||  |||| |||| ||||||  ||||||||||||||||| | |||||||||||||||||| ||| | |||    
T  42180673 gtgaatactgaccgcaaataatggttgagagaaaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaataatgatgtg 42180772  T
Q  208 tcatgttttaatttgttgtttgtaagaatgata 240  Q
    |||||||||| ||||||||||||||||||||||    
T  42180773 tcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 28217572 - 28217783
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gag 146  Q
    |||||||||||||||| |||||| |||||||||| |||||   ||||| ||||||||||||||| |||| || ||||||||||||||||||||||  |||    
T  28217572 aaacaacaaattaaaacatgacacgtcatttttttttctt---ttaaccatgattggtggtggtgaatagtaactgcaaataatggttgagagagaggag 28217668  T
Q  147 aagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgtta 245  Q
     |||| ||||||  ||||||||||||           ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||    
T  28217669 gagcaattatttttcatttcttaaat-----------tattttaaaataaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgtta 28217757  T
Q  246 ggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||| ||||||||    
T  28217758 ggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 48871251 - 48871503
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      ||| |||||||||||| ||||||  ||||||||| ||  ||||||||| |||||||||||||    
T  48871251 aattcttgtgtaggaacgaacctaactatcattcttacaaataacaaattaaaacatgacacatcattttttttt--tcttttaaccatgattggtggtg 48871348  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || |||| || ||||||||||| ||||||||||  ||| |||| ||||||  ||||||||||||           ||||||||||||||||||| |||||    
T  48871349 gtgaatattaactgcaaataatagttgagagagaggaggagcagttatttttcatttcttaaat-----------tattttaaaataaaacaatgacgtg 48871437  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
      ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  48871438 caatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcaa 48871503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 4156896 - 4157109
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||||||| |||||||||| | ||      ||| || ||||||||| |||||| |||||||||| ||  ||||||||| |||||||||||||    
T  4156896 aattcttgtgtaggaaggaacctaactatcattcttacaaataataaattaaaacatgacacgtcattttttttt--tcttttaaccatgattggtggtg 4156993  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||||||||||||||||||||  ||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  4156994 gtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtg 4157093  T
Q  208 tcatgttttaatttgt 223  Q
      |||||||| |||||    
T  4157094 caatgttttactttgt 4157109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 50905103 - 50904992
Alignment:
Q  161 atttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatg--atacgttaggttcgttcctac 258  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||  |||  ||||||||||||||||    
T  50905103 atttcttaaattatttccaaataattttaaaataaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctac 50905004  T
Q  259 acaaaaatttct 270  Q
    |||| |||||||    
T  50905003 acaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 10227803 - 10227711
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||    
T  10227803 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctca 10227711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 26552165 - 26552258
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||    
T  26552165 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctcaa 26552258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 10227910 - 10227976
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 7062184 - 7062260
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7062184 aaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 19059451 - 19059378
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatt 267  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  19059451 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 48752590 - 48752657
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  48752590 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 42180638 - 42180569
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||    
T  42180638 acgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctcaa 42180569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 48871312 - 48871247
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  48871312 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 50893161 - 50893226
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  50893161 gtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 28217606 - 28217530
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  28217606 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 4156968 - 4156889
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    |||| ||| ||||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  4156968 aaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctcaaa 4156889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 19059551 - 19059634
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaa 263  Q
    ||||||||||||| |||||||  | ||||||| |||||||||||| ||| |||| |||||| ||||||||||||||||||||||    
T  19059551 aattattttaaaagaaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaaa 19059634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 50905108 - 50905175
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  50905108 acgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 41834072 - 41834140
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||| |||||||||    
T  41834072 acgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctca 41834140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  206 tgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaa 262  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 48752653 - 48752532
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||| |||||||||||||| | ||      |||||||||||||||| |||||| |||||||| | |||||   ||||  |||||||||||||    
T  48752653 aattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttattttctt---ttaatcatgattggtggtg 48752557  T
Q  111 gtaaatactatctgcaaataatggt 135  Q
    || ||||||| ||||||||||||||    
T  48752556 gtgaatactaactgcaaataatggt 48752532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 26552067 - 26551992
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttc 269  Q
    |||||||  ||||| ||| ||||||||| ||||||||||| |||||| ||||| ||||||||||||||| ||||||    
T  26552067 aaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 37177666 - 37177890
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gag 146  Q
    |||||| |||||||||||||||| || ||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  |||    
T  37177666 aaacaataaattaaaatatgacatgtaattttttttt-ttcttttaattatgattggtggtggtaaatactaactgcaaataatggttgagagagaggag 37177764  T
Q  147 aagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgtta 245  Q
     |||  ||||||  |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  37177765 gagctgttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgtta 37177864  T
Q  246 ggttcgttcctacacaaaaatttctc 271  Q
     ||||||||||| |||| ||||||||    
T  37177865 tgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 18936718 - 18936941
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gag 146  Q
    |||||||||||||||| |||| | ||||||||||  |||||||||||  ||||||||||||||| ||||||| |||||||||||||| |||||||  |||    
T  18936718 aaacaacaaattaaaacatgatacgtcatttttt--tcttcttttaatcatgattggtggtggtgaatactaactgcaaataatggtcgagagagaggag 18936815  T
Q  147 aagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgtta 245  Q
     |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||    
T  18936816 gagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatatta 18936915  T
Q  246 ggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||| |||| ||||||||    
T  18936916 ggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 49 - 271
Target Start/End: Complemental strand, 11147246 - 11147014
Alignment:
Q  49 aaacaacaaattaaaatatgacaagtcattttttcttc--ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgag--agagg 144  Q
    |||||| |||||||||||||||| |||||||||| ||   |||||||||| ||||||||||||||| ||||||| | ||||||||||||||||  |||||    
T  11147246 aaacaataaattaaaatatgacatgtcattttttttttctttcttttaaccatgattggtggtggtgaatactaacagcaaataatggttgagagagagg 11147147  T
Q  145 agaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaat-----aacgtgtcatgttttaatttgttgtttgtaagaatga 238  Q
    || |||| ||||||  | ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  11147146 aggagcatttatttttcctttcttaaattatttccaaattattttaaaataaaacaatgacaagacgtgtcatgttttaatttgttgtttgtaagaatga 11147047  T
Q  239 tacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||  |||||||||||||||||||| ||||||||    
T  11147046 tatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 3102713 - 3102807
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  3102713 aattattttaaaaaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaaa 3102807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 40534136 - 40534227
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  40534136 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 18381488 - 18381573
Alignment:
Q  186 tttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 40534040 - 40533963
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  40534040 aaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 5121005 - 5121071
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 3102617 - 3102540
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  3102617 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 13690292 - 13690216
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  13690292 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 9231657 - 9231579
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||  ||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||| |||||||||    
T  9231657 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctca 9231579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 18936752 - 18936676
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 9231753 - 9231825
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgt 252  Q
    ||||||||||||| |||||||  ||||  ||||||||||||||||||||||||| |||||| |||||||||||    
T  9231753 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 7298896 - 7298634
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| || ||| || ||||||| || |||||||||| |||||||||||||    
T  7298896 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacataacacgt-attttttttt-ttcttttaaccatgattggtggtg 7298799  T
Q  111 gtaaatactatctgcaaataatggttgaga--gaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || |||||||  ||||||||||||||||||  |||||| |||| ||||||  ||||||||||||||||| | |||||||||||||||||||||| |||||    
T  7298798 gtgaatactaagtgcaaataatggttgagaaagaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaacaatgacgtg 7298699  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  7298698 tcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctca 7298634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 40521020 - 40521281
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      ||||||||||||||||||||||| |||||  ||| ||  ||||||||| ||||||||| |||    
T  40521020 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaatatgacacgtcataatttttt--tcttttaaccatgattggtagtg 40521117  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| | ||||||||||||||||||||  ||| |||| ||||||  ||||| ||||||||||||| |||||||||||||||||||||| | |||    
T  40521118 gtgaatactaaccgcaaataatggttgagagagaggaggagcagttatttt-catttattaaattatttcctaattattttaaaataaaacaatgatgtg 40521216  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  40521217 tcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 40521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 46567961 - 46568196
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||| ||||| | ||      |||||||||||||||| |||||| |||||||| | ||  ||||||||||||||||||||||     
T  46567961 aattcttgtgtaggaacgaacttaactatcattcttacaaacaacaaattaaaacatgacacgtcattttatttt--tcttttaactatgattggtggta 46568058  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||| ||||||||||||||||  ||| |||| ||||||  ||||| ||||||||||||| ||||||||| |||||||||||| | |||    
T  46568059 gtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttattaaattatttcctaattatttttaaataaaacaatgatgtg 46568158  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgtta 245  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  46568159 tcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 16979677 - 16979492
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||||||||||| |||||| | ||      ||| |||||||||||| |||||| |||||||||| ||  ||||||||| || ||||||||||    
T  16979677 aattcttgtgtaggaacgaatctaactatcattcttacaaataacaaattaaaacatgacacgtcattttttttt--tcttttaaccataattggtggtg 16979580  T
Q  111 gtaaatactatctgcaaataatggttgag--agaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataa 195  Q
    || ||||||| ||||| ||||||||||||  ||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  16979579 gtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataa 16979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 28949065 - 28948893
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||| |||||||||||||||||||||| | ||      |||||| ||||||||| |||||| |||||||||| |  |||||||||| |||||||||||||    
T  28949065 aatttttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgtcattttttttctttcttttaaccatgattggtggtg 28948966  T
Q  111 gtaaatactatctgcaaataatggtt----gagagaggagaagca-ttatttcacatttcttaaattatttcc 178  Q
    || ||||||| | |||||||||||||    |||||||||| |||| ||||||  |||||||||||||||||||    
T  28948965 gtgaatactaaccgcaaataatggttcagagagagaggaggagcagttatttttcatttcttaaattatttcc 28948893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 28948993 - 28949069
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28948993 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 7298833 - 7298900
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 40521083 - 40521016
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  40521083 acgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 19805587 - 19805678
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| ||| |||  |||||||||||||||||||||| ||| |||| |||||| |||| |||||||||||||||| ||||||||    
T  19805587 aattattttaaaagaaagcaacgacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 47478434 - 47478532
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggtt--gagagaggagaagc-attatttcacatttcttaaattatttccaaat 182  Q
    |||||||||| ||||||| ||||||| ||||||| |||||||||||||||  |||||||||| ||| |||||||  |||||||||||||||||||||||    
T  47478434 ttcttttaaccatgattgatggtggtgaatactaactgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttccaaat 47478532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 16979605 - 16979682
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  16979605 aaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctca 16979682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 46568024 - 46567960
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  46568024 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 19804863 - 19804796
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||| ||||| ||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||    
T  19804863 gtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctca 19804796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 47478415 - 47478367
Alignment:
Q  216 taatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaa 265  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  47478415 taatttgttgtttgtaagaatgata-gttaagttcgtttctacacaaaaa 47478367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 35454455 - 35454710
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||| |||||||||||||| | ||      |||||||||||||||| |||||| ||||||||||    |||||||||| |||||||||||||    
T  35454455 aattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttt----ttcttttaaccatgattggtggtg 35454550  T
Q  111 gtaaatactatctgcaaataatggttgagagaggaga--agca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||||||||||||||||||||  ||  |||| ||||||  ||||||||||||||||||||||||||||| || ||||||||| |||||    
T  35454551 gtgaatactaactgcaaataatggttgagagagaggacgagcagttatttttcatttcttaaattatttccaaattatttttaactaaaacaatgacgtg 35454650  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  35454651 tcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 5146508 - 5146767
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||| |||||||||||||||||||||| | ||      |||||| ||||||||| |||||| || |||||||    |||||||||| |||||||||||||    
T  5146508 aattattgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgttatttttt----ttcttttaaccatgattggtggtg 5146603  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| ||||||||||||||||||||||  ||| || | ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5146604 gtgaatactaactgcaaataatggttgagagagaggaggaggagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 5146703  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||    
T  5146704 tcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 6518462 - 6518202
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||| ||||||||||||| | ||      ||||||||||||||||||||| |  |||||||||    | |||||||| |||||||||||||    
T  6518462 aattcttgtgtagtaacgaacctaactatcattcttacaaacaacaaattaaaatatgatacatcatttttt----tccttttaaccatgattggtggtg 6518367  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| | ||||||||||||||||||||  ||| | || ||||||  |||||||||||||||||||||||||||||||||||||||||| || ||    
T  6518366 gtgaatactaacggcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacatg 6518267  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
      ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  6518266 caatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 6518202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 13823154 - 13823412
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttt------tataaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| |      ||||||||| ||| ||||| |||||| || |||||||    |||||||||| |||||||||||||    
T  13823154 aattcttgtgtaggaacgaacctaactatcattcgtataaacaataaactaaaacatgacacgt-atttttt----ttcttttaaccatgattggtggtg 13823248  T
Q  111 gtaaatactatctgcaaataatggttgaga--gaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || |||||||  ||||||||||||||||||  |||||| |||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  13823249 gtgaatactaagtgcaaataatggttgagaaagaggaggagcaattatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 13823348  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||| ||||||| ||||||| |||| |||||||||||||||| ||||||||    
T  13823349 tcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 87 - 272
Target Start/End: Original strand, 33377723 - 33377913
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag----gagaagca-ttatttcacatttcttaaattatttccaaa 181  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    ||| |||| ||||||   |||||||||||||||||| ||    
T  33377723 ttcttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagaggagcagttattttttatttcttaaattatttcctaa 33377822  T
Q  182 ttattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  33377823 ttattttaaaataaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctca 33377913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 102 - 271
Target Start/End: Complemental strand, 228889 - 228717
Alignment:
Q  102 ttggtggtggtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaac 198  Q
    ||||||||||| ||||| | | ||||||||||||||||||||  ||| |||| ||| ||  ||||||||||||||||||| |||||||||||||||||||    
T  228889 ttggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagcagttagttttcatttcttaaattatttcctaattattttaaaataaaac 228790  T
Q  199 aataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  228789 aataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 8489234 - 8489123
Alignment:
Q  160 catttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||    
T  8489234 catttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctaca 8489135  T
Q  260 caaaaatttctc 271  Q
    ||| ||||||||    
T  8489134 caagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 40881901 - 40881790
Alignment:
Q  160 catttcttaaattatttccaaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  40881901 catttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctaca 40881804  T
Q  260 caaaaatttctcaa 273  Q
    ||| ||||||||||    
T  40881803 caacaatttctcaa 40881790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 40881912 - 40882066
Alignment:
Q  101 attggtggtggtaaatactatctgcaaataatggttgagagaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaaca 199  Q
    |||||||||||  ||||||| | | || ||||||||||||||| || || | || |||  ||||||||||||||||||||||||||||||||||||||||    
T  40881912 attggtggtggcgaatactaaccgtaagtaatggttgagagagaaggagtagttgttttccatttcttaaattatttccaaattattttaaaataaaaca 40882011  T
Q  200 ataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttc 254  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  40882012 ataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 19898926 - 19899019
Alignment:
Q  179 aaattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||    
T  19898926 aaattattttaaaataaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctca 19899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 791683 - 791592
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  791683 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 26534671 - 26534762
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  26534671 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 8323881 - 8323970
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttc 269  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  8323881 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 256
Target Start/End: Original strand, 27319556 - 27319716
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaatt 183  Q
    |||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||  |||||||| ||||||  ||||||||||||                
T  27319556 ttcttttaaccatgattggtggtggtgaatcctagctgcaaataatggttgagagagaggagaagcaattatttttcatttcttaaat------------ 27319643  T
Q  184 attttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcct 256  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||| ||||| || ||||||    
T  27319644 attttaaaataaaacaatgatgtttcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 130421 - 130514
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    ||||||||||||| |||||||  |||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||||||||    
T  130421 aattattttaaaagaaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctcaa 130514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 5146580 - 5146504
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  5146580 aaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 19897229 - 19897359
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||| |||||||||||||||||||||| | ||      |||||||||||||||| |||||| ||||| |||| |||| |||||||| |||||||||||||    
T  19897229 aattattgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatatttt-ttct-cttttaaccatgattggtggtg 19897326  T
Q  111 gtaaatactatctgcaaataatggttgagagag 143  Q
    || ||||||| ||||||||||||||||||||||    
T  19897327 gtgaatactaactgcaaataatggttgagagag 19897359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14388516 - 14388587
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaat 275  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  14388516 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctcaaat 14388587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 19897292 - 19897221
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaat 275  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  19897292 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataatttttcaaat 19897221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 35454527 - 35454448
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||    
T  35454527 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcaaa 35454448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 26534583 - 26534506
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||    
T  26534583 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 8323784 - 8323704
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    |||||||  ||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||| |||||||||||    
T  8323784 aaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctcaaa 8323704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 14069928 - 14069861
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 42630880 - 42630968
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    ||||||||||||| |||||||  ||||||||| ||||||||| ||||||||||| |||||| ||||||||||| ||||||||| |||||    
T  42630880 aattattttaaaagaaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 130331 - 130254
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  |||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||||| ||||||||    
T  130331 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 42630788 - 42630711
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||| | ||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||    
T  42630788 aaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 1276111 - 1276060
Alignment:
Q  272 aaatccttgtaacgcgaaaatctatgaatgaattcaaatctagatgagtatt 323  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1276111 aaatccttgtaacgcgaaaatctatgaatgaattcaaatgtagatgagtatt 1276060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 791810 - 791870
Alignment:
Q  214 tttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctcaaa 791870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  210 atgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 13823217 - 13823150
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||| ||| |||||| || |||||||| ||||||||||||||||||||| ||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 27319550 - 27319482
Alignment:
Q  199 aataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaattt 268  Q
    |||||||| |||||||||||||| || ||||||||||||||| |||| |||| || ||||||||||||||    
T  27319550 aataacgtatcatgttttaatttattatttgtaagaatgata-gttaagttcattactacacaaaaattt 27319482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 228957 - 228901
Alignment:
Q  87 ttcttttaactatgattggtggtggtaaatactatctgcaaataatggttgagagag 143  Q
    |||||||||| ||||||||||||||| ||||| | | ||||||||||||||||||||    
T  228957 ttcttttaaccatgattggtggtggtgaataccaaccgcaaataatggttgagagag 228901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 33377722 - 33377686
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgt 230  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  33377722 aaaataataacgtgtcatgttttaatttattgtttgt 33377686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 42681824 - 42681864
Alignment:
Q  161 atttcttaaattatttccaaattattttaaaataaaacaat 201  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  42681824 attttttaaattatttccatattattttaaaagaaaacaat 42681864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 38085971 - 38086231
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||||||||||||||||||| |||||| | ||      |||||||||||||||| |||||| ||| ||||    | |||||||||| |||||||||||||    
T  38085971 aattcttgtgtaggaacgaaactaactatcattcttacaaacaacaaattaaaacatgacacgtcgtttt---attttcttttaaccatgattggtggtg 38086067  T
Q  111 gtaaatactatctgcaaataatggtt--gagagaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||||| |||||||||||||||  |||||||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||     
T  38086068 gtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaatgacgta 38086167  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  38086168 tcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 3671825 - 3672087
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    ||||||||||||||||||||||||||| | ||      |||||||||||||||| ||||||  ||||||||| ||||||||||||| ||||||| |||||    
T  3671825 aattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacatcatttttt-ttcttcttttaaccatgattgatggtg 3671923  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || |||| || |  |||||||||||||||||||  ||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  3671924 gtgaatagtaaccacaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtg 3672023  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    | || |||||||||||| ||||||| |||||||  |||| ||||||||| || || ||||||||    
T  3672024 ttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 31470837 - 31470585
Alignment:
Q  17 aattcttgtgtaggaacgaacctaacttttat------aaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggtg 110  Q
    |||| |||||||||||||||||||||| | ||      |||||||||||||||  ||||||  |||||||||    |||||||||| |||||||||||||    
T  31470837 aatttttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaataatgacacatcatttttt----ttcttttaaccatgattggtggtg 31470742  T
Q  111 gtaaatactatctgcaaataatggttgagagag--gagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaataacgtg 207  Q
    || ||||        ||| ||||||||||||||  |||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31470741 gtgaata--------aaacaatggttgagagagaggagaagcaattatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 31470650  T
Q  208 tcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  31470649 tcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctcaa 31470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 42028669 - 42028577
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  42028669 aattattttaaaagaaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctca 42028577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 15332844 - 15332926
Alignment:
Q  189 aaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 16115137 - 16115043
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaaa 274  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  16115137 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctcaaa 16115043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 13280008 - 13280099
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  13280008 aattattttaaaagaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 2059657 - 2059748
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||    
T  2059657 aattattttaaaagaaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 7317808 - 7317899
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||| || || ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  7317808 aattattttaaaagaaaaaaacaatgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 31860258 - 31860349
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| ||||||||    
T  31860258 aattattttaaaagaaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 16115231 - 16115308
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||| | ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16115231 aaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 36059283 - 36059351
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  36059283 acgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 42028765 - 42028844
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    |||||||  |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  42028765 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcaa 42028844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 3671886 - 3671822
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttct 270  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  3671886 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 31860156 - 31860079
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| ||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||    
T  31860156 aaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 38086034 - 38085967
Alignment:
Q  203 acgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  38086034 acgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 31470776 - 31470841
Alignment:
Q  205 gtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31470776 gtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 7317712 - 7317635
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||  ||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||    
T  7317712 aaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 13279901 - 13279838
Alignment:
Q  210 atgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctcaa 13279838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 2059567 - 2059490
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||| | ||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||    
T  2059567 aaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 15330502 - 15330586
Alignment:
Q  112 taaatactatctgcaaataatggttgagagag--gagaagca--ttatttcacatttcttaaattatttccaaattattttaaaa 192  Q
    ||||||||| ||||||||||||||||||||||  ||| ||||  ||||||  ||||||||||||||||||| |||||||||||||    
T  15330502 taaatactaactgcaaataatggttgagagagaggaggagcagtttatttttcatttcttaaattatttcctaattattttaaaa 15330586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  214 tttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 15851 - 16044
Alignment:
Q  17 aattcttgtgtaggaacgaacctaactt-------ttataaacaacaaattaaaatatgacaagtcattttttcttcttcttttaactatgattggtggt 109  Q
    |||||||||||||||||||||||||| |       ||| |||||||||||||||| |||||| || ||| ||| || |||||||||| ||||||||| ||    
T  15851 aattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattatttttttttcttttaaccatgattggtagt 15950  T
Q  110 ggtaaatactatctgcaaataatggtt--gagagaggagaagca-ttatttcacatttcttaaattatttccaaattattttaaaataaaacaa 200  Q
    ||| |||| || | |||||||||||||  |||||||||| |||| ||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  15951 ggtgaatattaaccgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaa 16044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 15929 - 15847
Alignment:
Q  189 aaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctc 271  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15929 aaaaaaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

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Target: scaffold0214 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 11717 - 11624
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    ||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||    
T  11717 aattattttaaaagaaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattactcaa 11624  T

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Target: scaffold0214; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 11814 - 11892
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  11814 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 11892  T

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Target: scaffold0135 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 37523 - 37445
Alignment:
Q  194 aaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctca 272  Q
    |||||||  ||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||| |||||||||    
T  37523 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctca 37445  T

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Target: scaffold0135; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 37619 - 37691
Alignment:
Q  180 aattattttaaaataaaacaataacgtgtcatgttttaatttgttgtttgtaagaatgatacgttaggttcgt 252  Q
    ||||||||||||| |||||||  ||||  ||||||||||||||||||||||||| |||||| |||||||||||    
T  37619 aattattttaaaagaaaacaacgacgtagcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 17556 - 17618
Alignment:
Q  210 atgttttaatttgttgtttgtaagaatgatacgttaggttcgttcctacacaaaaatttctcaa 273  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||||||| | ||| ||||||    
T  17556 atgttttaatttattgtttgtaaaaatgatac-ttacgttcgttcctacacgagaatatctcaa 17618  T

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