View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5162-Insertion-1 (Length: 1025)
Name: NF5162-Insertion-1
Description: NF5162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5162-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 15054738 - 15054282
Alignment:
| Q |
8 |
gcggccaccgtgaacactttctcgacagaattcacagaacaaatcgcggcatttgcggcattatggaatgaaagaaaggatttatcttgttagttggttc |
107 |
Q |
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| T |
15054738 |
gcggccaccgtgaacactttctcaacagaattcacagaacaaatcgcggcatttgcggcattatggaatgaaagaaaggatttatcttgttagttggttc |
15054639 |
T |
|
| Q |
108 |
ttgaatctatttcagtttaaaagatatagaatgaagatttagtatatactcaagcctacgaaattttgatgaatatagtgcggccgaggtaatcaagtcc |
207 |
Q |
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| T |
15054638 |
ttgaatctatttcagtttaaaagatatagaatgaagatttagtatatactcaagcctacaaaattttgatgaatatagtgcggccgaggtaatcaagtcc |
15054539 |
T |
|
| Q |
208 |
tttcttgcatgtacgcaacaagaaaggaagtgacaagcataatcaaatgtatgaaaaccaattaaattaaaattcagtaatccccttataatt--atatc |
305 |
Q |
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| T |
15054538 |
tttcttgcatgtacgcaacaagaaaggaagtgacaagcataatcaaatgtatgaaaaccaattaaattaaaattcagtaatccccttataattatatatc |
15054439 |
T |
|
| Q |
306 |
ccttaccggaaagggagtatatggccttcggatatacattcatcctcctgcaaagtatgaaatatttggtgccggtaaagttagattggtgtgctaaagg |
405 |
Q |
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| T |
15054438 |
ccttaccggaaagggagtatatggccttcggatatacattcatcctcctgcaaagtatgaaatatttggcgccggtaaagttagattggtgtgctaaagg |
15054339 |
T |
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| Q |
406 |
ggcttctcgagttgtgcgacggaacactcgtcgaatcatatatcatagtctgtaaacaa |
464 |
Q |
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| T |
15054338 |
ggcttctcgagttgtgcgacggaacactagtcgaatc--atatcatagtctgtaaacaa |
15054282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 807 - 866
Target Start/End: Complemental strand, 15930865 - 15930805
Alignment:
| Q |
807 |
agttaaataagtgttttcctccaacgattcag-aaaagagaaacaggttaagtgaagagaa |
866 |
Q |
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| T |
15930865 |
agttaaacaagtgttttccttcaacgatgcaggaaaagagaaacaggttaggtgaagagaa |
15930805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 869 - 995
Target Start/End: Complemental strand, 15927348 - 15927219
Alignment:
| Q |
869 |
gttgtcatttttcattggatttgaattgtattttactat--ggtta-tttgtaaggaataaactttgtggtacttagccacgaaagccagtac-attagg |
964 |
Q |
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| T |
15927348 |
gttgtcatttatcattggatttgagttgtattttaccattgtgttattttgtaacgaatacactttgtggtacttag-catgtaagtctctacaattagg |
15927250 |
T |
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| Q |
965 |
tctcactttaatttaatggcttgtaaaacaa |
995 |
Q |
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| T |
15927249 |
tctcacttttattttattgcctgtaaaacaa |
15927219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 15054022 - 15053966
Alignment:
| Q |
92 |
tcttgttagttggttcttgaatctatttcagtttaaaagatatagaatgaagattta |
148 |
Q |
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| T |
15054022 |
tcttgtaagttgtttcttgaatctatttcaatttggtagatatagaatgaagattta |
15053966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 714 - 752
Target Start/End: Original strand, 15025173 - 15025211
Alignment:
| Q |
714 |
tgaatttttggtaccgaatcattttatcttttaatgtgt |
752 |
Q |
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| T |
15025173 |
tgaatttttggtattgaatcattttatcttttaatgtgt |
15025211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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