View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5162-Insertion-3 (Length: 817)
Name: NF5162-Insertion-3
Description: NF5162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5162-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 763; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 7 - 817
Target Start/End: Complemental strand, 38226112 - 38225304
Alignment:
| Q |
7 |
acttttggtccttccatttactcttgctttagactgggtccctggattttctatttgcaccaatttacctgggtatttatcagaagaaatgtggtttgta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226112 |
acttttggtccttccatttactcttgctttagactgggtccctggattttctatttgcaccaatttacctgggtatttatcagaagaaatgtggtttgta |
38226013 |
T |
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| Q |
107 |
acccgtccatcgctctttgactaggacattattaagttttgttgatatggatgtcattttcccaatttcaaaatttaaaatcctgaaggatgttatttaa |
206 |
Q |
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| T |
38226012 |
acccgtccatcgctctttgactaggacattattaagttttgttgatatggatgtcattttcccaatttcaaaatttaaaatcctgaaggatgttatttaa |
38225913 |
T |
|
| Q |
207 |
catccatattttaggcaaggcaaagccatagtctatatggcaaaacatactgatatgtagaacgcaatgttcattgtgaactgtatgacatataaataga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225912 |
catccatattttaggcaaggcaaagccatagtctatatggcaaaacatactgatatgtagaacgcaatgttcattgtgaactgtatgacatataaataga |
38225813 |
T |
|
| Q |
307 |
tataaggggtcacaaacaaatggagatggattacgctaatgattagtggaactaaattgacaaaatctaaaatacaggaaaaaatcgtggactataaaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38225812 |
tataaggggtcacaaacaaatggagatggattacactaatgattagtggaactaaattgacaaaatctaaaatacaggaaaaaattgtggactataaaat |
38225713 |
T |
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| Q |
407 |
aggtagagatgaagtggaatgcaaatattgtgttctgatgctgcaatatatccacaataattccatagcaagcatagggaatcttactagaaaatttgga |
506 |
Q |
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| T |
38225712 |
aggtagagatgaagtggaatgcaaatattgtgttctgatgctgcaatatatccacaataattccatagcaagcatagggaatctcactagaaaatttgga |
38225613 |
T |
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| Q |
507 |
gattcggtcaataatttttgtagttctaatagcacgtaccacttctgcagatgatggagtactctattccatcaaaagaggcagatatcttaagtcaaga |
606 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225612 |
gattcggtcaataatttttgtagttctaacagcacgtaccacttctgcagatgatggagtactctattccatcaaaagaggcagatatcttaagtcaaga |
38225513 |
T |
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| Q |
607 |
aagtctcttcgtcattggcattctttccttgattttacatctttccaccaataaagtacttgaagtgacttcaaagaccattctctttaatacttggata |
706 |
Q |
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| T |
38225512 |
aagtctcttcgtcattggcattctttccttgattttacatctttccaccaataaagtacttaaagagacttcaaagaccattctctttaatacttgtata |
38225413 |
T |
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| Q |
707 |
atctctgttgtcaatactatagtgtgtgcagcttcttcaaaaggaccggctttgggttgaccatgacgagggaacaggcaccgggagaaactttaatatt |
806 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
38225412 |
atctctgttgtcaatactatagtgtgtgcagcttcttcaaaaggaccggcttt-ggttgaccatgacgagggaacaagcacc-ggagaaactttaatatt |
38225315 |
T |
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| Q |
807 |
tgttcttttgc |
817 |
Q |
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||||||||||| |
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| T |
38225314 |
tgttcttttgc |
38225304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 42986031 - 42986107
Alignment:
| Q |
7 |
acttttggtccttcca-tttactcttgctttagactgggtccctggattttctatttgcaccaatttacctgggtat |
82 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
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| T |
42986031 |
acttttggtccttccaatttactcttgctttagactttgtccctggattatctatttgtgccaaattacctgggtat |
42986107 |
T |
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