View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5162-Insertion-6 (Length: 191)
Name: NF5162-Insertion-6
Description: NF5162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5162-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 8511657 - 8511832
Alignment:
| Q |
10 |
tctaatatgcaacattcattttttgctcatccattacattataatgacttttttaatctttcaacattacattggctaaaaagttgtggttgtagatgta |
109 |
Q |
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| T |
8511657 |
tctaatatgcttcattcattttttgctcatccattacattataatgatttctttaatctttcaacattacattggctaaaaagttgtggtcgtacatgta |
8511756 |
T |
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| Q |
110 |
cattgacttgaaagtcattgttatcatattataggagcattgattttggtttcctatttttcctacctaattgatttt |
187 |
Q |
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| T |
8511757 |
cattgacttgaaagtcattgttatcgtattataggagcattga--ttgatttcctatttttactacctgattggtttt |
8511832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 8521257 - 8521389
Alignment:
| Q |
22 |
cattcattttttgctcatccattacattataatgactttttt-aatctttcaacattacattggctaaaaagttgtggttgtagatgtacattgacttga |
120 |
Q |
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| T |
8521257 |
cattcatttttggttcatccattacga-ataccgacttttttgaatctttcaacgttacattggctaaaaagctgtggttgtacatgtagattgacttta |
8521355 |
T |
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| Q |
121 |
aagtcattgttatcatattataggagcattgatt |
154 |
Q |
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| T |
8521356 |
aagtcattgttatcgtattataggagcatcgatt |
8521389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 8518525 - 8518599
Alignment:
| Q |
44 |
tacattataatgacttttttaa-tctttcaacattacattggctaaaaagttgtggttgtagatgtacattgactt |
118 |
Q |
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| T |
8518525 |
tacattataatgacttttccaactctttcaagattattttggctaaaaa-ttgtggttgtacatccacattgactt |
8518599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 12251036 - 12251123
Alignment:
| Q |
66 |
tctttcaacattacattggctaaaaagttgtggttgtagatgtacattgacttgaaagtcattgttatcatattataggagcattgatt |
154 |
Q |
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| T |
12251036 |
tctttgaacatgacattggctaaaaagttgtggttgtacatgtacaatgactttaaaatcattgttatcgtattata-gagcattgatt |
12251123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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