View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5162_high_1 (Length: 416)

Name: NF5162_high_1
Description: NF5162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5162_high_1
NF5162_high_1
[»] chr3 (9 HSPs)
chr3 (159-277)||(8529511-8529629)
chr3 (18-143)||(8511534-8511659)
chr3 (192-274)||(10566459-10566541)
chr3 (192-274)||(10569709-10569791)
chr3 (172-230)||(8511409-8511467)
chr3 (192-274)||(20282972-20283054)
chr3 (192-274)||(29673817-29673899)
chr3 (192-273)||(8545689-8545770)
chr3 (359-395)||(8530245-8530281)
[»] chr5 (7 HSPs)
chr5 (192-274)||(38485311-38485393)
chr5 (192-273)||(36101340-36101421)
chr5 (195-273)||(41195196-41195274)
chr5 (192-273)||(5912240-5912321)
chr5 (192-273)||(5919175-5919256)
chr5 (192-273)||(35418406-35418487)
chr5 (236-273)||(6750158-6750195)
[»] chr1 (2 HSPs)
chr1 (192-274)||(16861423-16861505)
chr1 (192-273)||(40769299-40769380)
[»] chr7 (2 HSPs)
chr7 (193-273)||(24185320-24185400)
chr7 (236-277)||(47019670-47019711)
[»] chr4 (6 HSPs)
chr4 (192-273)||(235113-235194)
chr4 (192-273)||(39219175-39219256)
chr4 (192-273)||(39225701-39225782)
chr4 (192-273)||(40055776-40055857)
chr4 (192-273)||(40056102-40056183)
chr4 (204-273)||(47114345-47114414)
[»] chr8 (2 HSPs)
chr8 (192-262)||(18308338-18308408)
chr8 (194-271)||(10267226-10267303)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 8529629 - 8529511
Alignment:
Q  159 tattgcaaaactataataagttaaggtgatttaaccattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtata 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||    
T  8529629 tattgcaaaactataataagttaaggtgatttaaccactacaaaatctcaattgagttagttcaatgatcatatcaccatatgcatcatctatatgtata 8529530  T
Q  259 atttaataaatgagattta 277  Q
    |||||||||||||||||||    
T  8529529 atttaataaatgagattta 8529511  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 8511659 - 8511534
Alignment:
Q  18 agaatgacccatcgaaatgcatgagccaactttaagtttgatatctttttcgaatcggcttttaaagnnnnnnnnattcgaataaattttttatgacaca 117  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||| |||        |||||||||||||||| ||||||||    
T  8511659 agaatgacccatcgaaatgcatgagtcaactttaagtttgatctctttttcgaattggccttttaagtattttttattcgaataaatttttaatgacaca 8511560  T
Q  118 ttctctttttcgatctagaagagtag 143  Q
    ||||||||||| || |||||||||||    
T  8511559 ttctctttttcaatttagaagagtag 8511534  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 10566541 - 10566459
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | |||||||||||||||||| | ||||||||||||||||||    
T  10566541 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatcatctatatatgtaatttaataaatgagat 10566459  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 10569791 - 10569709
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | |||||||||||||||||| | ||||||||||||||||||    
T  10569791 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatcatctatatatgtaatttaataaatgagat 10569709  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 8511467 - 8511409
Alignment:
Q  172 taataagttaaggtgatttaaccattacaaaatctcaattgagttagttcattgatcat 230  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||    
T  8511467 taataagttaagttgatttgaccactacaaaatctcaattgagttagttcaatgatcat 8511409  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 20283054 - 20282972
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | ||||||||| |||||||| | ||||||||||||||||||    
T  20283054 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatgatctatatatgtaatttaataaatgagat 20282972  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 29673817 - 29673899
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | |||||||||||| ||||| | ||||||||||||||||||    
T  29673817 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatcatttatatatgtaatttaataaatgagat 29673899  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 8545770 - 8545689
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   ||||||||| |||||||| | |||||||||||||||||    
T  8545770 accattagaaattctcagttgagtcagttcaatgatcacatctctatatgcataatctatatatgtaatttaataaatgaga 8545689  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 8530281 - 8530245
Alignment:
Q  359 attaaaattggacttaactcttcaaaataaattataa 395  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  8530281 attaaaattggacttcactcttaaaaataaattataa 8530245  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 38485393 - 38485311
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | |||||||||||||||||| | ||||||||||||||||||    
T  38485393 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatcatctatatatgtaatttaataaatgagat 38485311  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 36101340 - 36101421
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  36101340 accattagaaattctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 36101421  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 41195196 - 41195274
Alignment:
Q  195 attacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    |||| ||| ||||| | |||| |||||| |||||| || | |||||||||||||||||| | |||||||||||||||||    
T  41195196 attagaaattctcagtcgagtcagttcaatgatcacatcactatatgcatcatctatatatgtaatttaataaatgaga 41195274  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 5912240 - 5912321
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| ||| || ||   |||||||||||||||||| | |||||||||||||||||    
T  5912240 accattagaaattctcagttgagtcagttcaatgaccacatctctatatgcatcatctatatatgtaatttaataaatgaga 5912321  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 5919175 - 5919256
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| ||| || ||   |||||||||||||||||| | |||||||||||||||||    
T  5919175 accattagaaattctcagttgagtcagttcaatgaccacatctctatatgcatcatctatatatgtaatttaataaatgaga 5919256  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 35418406 - 35418487
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| ||| || ||   |||||||||||||||||| | |||||||||||||||||    
T  35418406 accattagaaattctcagttgagtcagttcaatgaccacatctctatatgcatcatctatatatgtaatttaataaatgaga 35418487  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 6750195 - 6750158
Alignment:
Q  236 tatatgcatcatctatatgtataatttaataaatgaga 273  Q
    |||||||||||||||||| | |||||||||||||||||    
T  6750195 tatatgcatcatctatatatgtaatttaataaatgaga 6750158  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 16861423 - 16861505
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgagat 274  Q
    ||||||| ||| ||||| |||||| |||||| ||||||||| | |||||||||||||||||| | ||||||||||||||||||    
T  16861423 accattagaaattctcagttgagtcagttcaatgatcatatcactatatgcatcatctatatatgtaatttaataaatgagat 16861505  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 40769380 - 40769299
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| | |||| | |||| |||||| |||| |||||||||||||||||| | |||||||||||||||||    
T  40769380 accattagaaattctcagtcgagtcacttcaatgatcacattactatatgcatcatctatatatgtaatttaataaatgaga 40769299  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 24185400 - 24185320
Alignment:
Q  193 ccattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    |||||| ||| ||||| |||||||||||||||||||| || | |||||||||||||||||| | || ||||||||||||||    
T  24185400 ccattagaaattctcacttgagttagttcattgatcacatcactatatgcatcatctatatatgtagtttaataaatgaga 24185320  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 47019670 - 47019711
Alignment:
Q  236 tatatgcatcatctatatgtataatttaataaatgagattta 277  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  47019670 tatatgcatcatctatatatgtaatttaataaatgagattta 47019711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 235194 - 235113
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| |||||||||||| |||| | |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  235194 accattagaaattctcaattgagtcagtttaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 235113  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 39219256 - 39219175
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  39219256 accattagaaattctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 39219175  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 39225782 - 39225701
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  39225782 accattagaaattctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 39225701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 40055857 - 40055776
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  40055857 accattataaattctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 40055776  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 40056102 - 40056183
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||||| ||| ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  40056102 accattagaaattctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 40056183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 47114345 - 47114414
Alignment:
Q  204 tctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatgaga 273  Q
    ||||| |||||| |||||| |||||| ||   |||||||||||||||||| | |||||||||||||||||    
T  47114345 tctcagttgagtcagttcaatgatcacatctctatatgcatcatctatatatgtaatttaataaatgaga 47114414  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 18308408 - 18308338
Alignment:
Q  192 accattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataattt 262  Q
    ||||||| ||| ||||| |||||| | |||| ||||||||| | |||||||||||||||||| | ||||||    
T  18308408 accattagaaattctcagttgagtcacttcaatgatcatatcactatatgcatcatctatatatgtaattt 18308338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 10267303 - 10267226
Alignment:
Q  194 cattacaaaatctcaattgagttagttcattgatcatattaatatatgcatcatctatatgtataatttaataaatga 271  Q
    ||||| ||| |||||  ||||| |||||| | | ||||| | |||||||||||||||||| | |||||||||||||||    
T  10267303 cattagaaattctcaggtgagtcagttcaataaccatatcactatatgcatcatctatatatgtaatttaataaatga 10267226  T

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