View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5162_low_3 (Length: 311)

Name: NF5162_low_3
Description: NF5162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5162_low_3
NF5162_low_3
[»] chr2 (30 HSPs)
chr2 (1-309)||(387089-387397)
chr2 (40-303)||(39338729-39338992)
chr2 (40-303)||(10524051-10524317)
chr2 (72-304)||(7874278-7874509)
chr2 (67-309)||(14106380-14106623)
chr2 (84-302)||(14405197-14405414)
chr2 (92-269)||(5254263-5254438)
chr2 (97-200)||(4471935-4472035)
chr2 (122-303)||(17116743-17116923)
chr2 (85-207)||(10173539-10173659)
chr2 (92-169)||(1269490-1269567)
chr2 (97-191)||(22885111-22885202)
chr2 (92-167)||(16959989-16960064)
chr2 (84-231)||(37770580-37770723)
chr2 (96-169)||(2062900-2062973)
chr2 (97-169)||(13337286-13337358)
chr2 (97-169)||(15126407-15126479)
chr2 (250-304)||(7460839-7460894)
chr2 (97-160)||(36276178-36276240)
chr2 (107-169)||(7695985-7696047)
chr2 (97-134)||(4162052-4162089)
chr2 (106-217)||(16952334-16952443)
chr2 (106-217)||(17022999-17023108)
chr2 (106-217)||(17060305-17060414)
chr2 (84-144)||(23650384-23650444)
chr2 (97-137)||(27739987-27740027)
chr2 (97-145)||(33788653-33788701)
chr2 (100-171)||(18681080-18681151)
chr2 (106-199)||(17079190-17079281)
chr2 (103-169)||(34230219-34230285)
[»] chr3 (33 HSPs)
chr3 (82-309)||(43012372-43012598)
chr3 (72-302)||(19176489-19176720)
chr3 (40-303)||(20611737-20611999)
chr3 (72-303)||(9583918-9584147)
chr3 (72-294)||(40023446-40023666)
chr3 (41-303)||(2392370-2392632)
chr3 (67-309)||(23328208-23328449)
chr3 (67-303)||(45163835-45164072)
chr3 (97-303)||(17550969-17551169)
chr3 (116-303)||(47235729-47235915)
chr3 (41-303)||(34475620-34475880)
chr3 (67-229)||(45398778-45398939)
chr3 (81-303)||(31482880-31483100)
chr3 (41-303)||(2394134-2394379)
chr3 (132-303)||(53247947-53248118)
chr3 (92-145)||(14755286-14755339)
chr3 (92-169)||(47945713-47945790)
chr3 (153-287)||(21342603-21342735)
chr3 (97-218)||(33143899-33144018)
chr3 (100-169)||(37123397-37123466)
chr3 (100-169)||(39021273-39021342)
chr3 (73-169)||(1652883-1652979)
chr3 (92-136)||(14879442-14879486)
chr3 (84-154)||(14193939-14194009)
chr3 (97-154)||(30127274-30127332)
chr3 (250-303)||(30352305-30352356)
chr3 (97-154)||(5556582-5556639)
chr3 (97-134)||(20710740-20710777)
chr3 (97-154)||(2782081-2782138)
chr3 (100-169)||(30935387-30935456)
chr3 (103-167)||(823434-823498)
chr3 (97-133)||(24099360-24099396)
chr3 (97-153)||(31424248-31424304)
[»] chr7 (38 HSPs)
chr7 (43-309)||(3867073-3867339)
chr7 (40-303)||(38306215-38306478)
chr7 (39-303)||(5860152-5860416)
chr7 (40-303)||(47325749-47326012)
chr7 (47-309)||(33435070-33435332)
chr7 (40-303)||(41089612-41089875)
chr7 (40-303)||(3419519-3419783)
chr7 (67-303)||(37794971-37795206)
chr7 (77-304)||(34389954-34390180)
chr7 (67-309)||(35745680-35745926)
chr7 (40-303)||(10244136-10244399)
chr7 (107-303)||(44353427-44353623)
chr7 (67-223)||(6584891-6585046)
chr7 (109-228)||(48161964-48162083)
chr7 (41-284)||(25160770-25161011)
chr7 (43-294)||(8745110-8745358)
chr7 (212-303)||(31971998-31972089)
chr7 (97-168)||(9349761-9349832)
chr7 (84-154)||(1320793-1320863)
chr7 (100-154)||(24324810-24324864)
chr7 (84-154)||(42533264-42533334)
chr7 (97-154)||(6716748-6716805)
chr7 (97-154)||(13311851-13311908)
chr7 (85-207)||(3478352-3478471)
chr7 (100-169)||(12480901-12480970)
chr7 (97-137)||(38485568-38485608)
chr7 (84-154)||(16828948-16829018)
chr7 (84-154)||(16954652-16954722)
chr7 (97-175)||(23983207-23983285)
chr7 (40-122)||(44755581-44755663)
chr7 (84-169)||(46133274-46133360)
chr7 (97-134)||(46262151-46262188)
chr7 (250-294)||(6585045-6585089)
chr7 (97-131)||(17802851-17802885)
chr7 (250-303)||(3419260-3419313)
chr7 (97-154)||(11379139-11379196)
chr7 (97-134)||(27993568-27993605)
chr7 (97-134)||(35206725-35206762)
[»] chr4 (31 HSPs)
chr4 (40-303)||(8254981-8255244)
chr4 (40-303)||(8268399-8268662)
chr4 (40-303)||(30964395-30964654)
chr4 (67-294)||(31050535-31050761)
chr4 (78-294)||(2825776-2825990)
chr4 (40-303)||(4305679-4305941)
chr4 (102-303)||(30167428-30167628)
chr4 (113-294)||(35341213-35341391)
chr4 (84-201)||(25753171-25753285)
chr4 (97-231)||(38637171-38637301)
chr4 (250-303)||(8706008-8706061)
chr4 (84-169)||(22811157-22811242)
chr4 (97-150)||(40813797-40813850)
chr4 (84-169)||(53823418-53823503)
chr4 (97-169)||(38929839-38929911)
chr4 (99-141)||(39421038-39421080)
chr4 (97-156)||(36962626-36962684)
chr4 (97-155)||(39041285-39041343)
chr4 (97-166)||(46698784-46698854)
chr4 (97-154)||(6599957-6600014)
chr4 (100-169)||(16501746-16501815)
chr4 (97-154)||(21387216-21387273)
chr4 (84-169)||(35800488-35800573)
chr4 (84-169)||(49747526-49747611)
chr4 (97-169)||(28966879-28966951)
chr4 (92-170)||(2061734-2061812)
chr4 (97-131)||(53756768-53756802)
chr4 (105-154)||(2792286-2792335)
chr4 (97-166)||(24740103-24740172)
chr4 (97-129)||(37707392-37707424)
chr4 (109-169)||(41117964-41118024)
[»] chr8 (25 HSPs)
chr8 (40-303)||(24995258-24995522)
chr8 (40-303)||(31207226-31207488)
chr8 (40-303)||(9519453-9519717)
chr8 (40-296)||(36630791-36631047)
chr8 (40-303)||(37986722-37986985)
chr8 (40-303)||(32066159-32066422)
chr8 (40-303)||(34388870-34389132)
chr8 (107-303)||(20138448-20138644)
chr8 (67-302)||(15821244-15821478)
chr8 (82-303)||(12898139-12898358)
chr8 (97-303)||(41893266-41893469)
chr8 (67-264)||(16457364-16457559)
chr8 (116-304)||(38577652-38577840)
chr8 (40-218)||(10248504-10248680)
chr8 (102-169)||(32945700-32945767)
chr8 (40-169)||(17656999-17657128)
chr8 (97-166)||(15906698-15906767)
chr8 (172-229)||(35816181-35816238)
chr8 (97-169)||(30236125-30236197)
chr8 (186-286)||(22773598-22773699)
chr8 (84-142)||(10552267-10552325)
chr8 (97-169)||(12198066-12198138)
chr8 (97-169)||(12442494-12442566)
chr8 (97-148)||(33967338-33967389)
chr8 (97-134)||(40531244-40531281)
[»] chr1 (30 HSPs)
chr1 (40-303)||(41920407-41920674)
chr1 (40-301)||(5389287-5389548)
chr1 (41-303)||(24449794-24450056)
chr1 (40-303)||(31585623-31585887)
chr1 (40-303)||(46692683-46692946)
chr1 (77-303)||(5459153-5459378)
chr1 (47-275)||(24684370-24684598)
chr1 (67-294)||(7857635-7857860)
chr1 (40-271)||(30685800-30686031)
chr1 (72-294)||(27031714-27031934)
chr1 (72-294)||(24658916-24659135)
chr1 (72-294)||(46814341-46814561)
chr1 (41-164)||(20113523-20113647)
chr1 (97-169)||(19598648-19598720)
chr1 (84-145)||(6583237-6583298)
chr1 (104-169)||(27102210-27102275)
chr1 (84-169)||(32864558-32864643)
chr1 (84-154)||(17033585-17033655)
chr1 (214-303)||(6764245-6764334)
chr1 (84-145)||(9313310-9313371)
chr1 (97-145)||(38544759-38544807)
chr1 (84-169)||(34774870-34774955)
chr1 (97-154)||(15840924-15840981)
chr1 (97-146)||(22200020-22200069)
chr1 (100-160)||(2877652-2877711)
chr1 (97-137)||(4651792-4651832)
chr1 (107-146)||(22239699-22239738)
chr1 (100-169)||(16147570-16147639)
chr1 (101-169)||(10785456-10785524)
chr1 (97-137)||(30655572-30655612)
[»] chr5 (21 HSPs)
chr5 (77-303)||(34378090-34378315)
chr5 (40-303)||(698315-698578)
chr5 (78-295)||(29087474-29087689)
chr5 (40-303)||(18593197-18593460)
chr5 (210-309)||(7161874-7161973)
chr5 (130-217)||(7162267-7162353)
chr5 (84-169)||(13954231-13954316)
chr5 (97-169)||(7195236-7195308)
chr5 (84-145)||(7392052-7392113)
chr5 (92-168)||(22675322-22675398)
chr5 (85-222)||(14302377-14302511)
chr5 (100-169)||(21402834-21402903)
chr5 (72-145)||(33258903-33258976)
chr5 (97-169)||(27713081-27713153)
chr5 (97-145)||(39184208-39184256)
chr5 (85-169)||(25992007-25992091)
chr5 (85-169)||(26045961-26046045)
chr5 (115-169)||(8297498-8297552)
chr5 (100-133)||(12046270-12046303)
chr5 (97-166)||(23426356-23426425)
chr5 (174-265)||(18313544-18313636)
[»] chr6 (16 HSPs)
chr6 (40-303)||(3117447-3117710)
chr6 (43-163)||(16510304-16510425)
chr6 (234-303)||(10541980-10542049)
chr6 (84-169)||(32935336-32935421)
chr6 (99-218)||(20701754-20701870)
chr6 (97-218)||(26215970-26216088)
chr6 (70-143)||(26534742-26534815)
chr6 (86-145)||(9224042-9224101)
chr6 (240-303)||(14663231-14663294)
chr6 (100-151)||(34105428-34105479)
chr6 (97-154)||(34092807-34092864)
chr6 (40-123)||(3880626-3880710)
chr6 (84-168)||(21266112-21266196)
chr6 (101-168)||(13423482-13423549)
chr6 (72-143)||(12794101-12794173)
chr6 (97-137)||(34090375-34090415)
[»] scaffold0068 (1 HSPs)
scaffold0068 (41-284)||(35655-35897)
[»] scaffold0343 (1 HSPs)
scaffold0343 (127-303)||(5747-5923)
[»] scaffold0200 (1 HSPs)
scaffold0200 (84-169)||(19382-19467)
[»] scaffold0119 (1 HSPs)
scaffold0119 (92-169)||(42135-42212)
[»] scaffold0063 (1 HSPs)
scaffold0063 (84-169)||(58126-58211)
[»] scaffold0050 (1 HSPs)
scaffold0050 (84-151)||(36706-36773)
[»] scaffold1613 (1 HSPs)
scaffold1613 (97-145)||(1038-1086)
[»] scaffold0620 (2 HSPs)
scaffold0620 (97-151)||(3842-3896)
scaffold0620 (97-154)||(8141-8198)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 387089 - 387397
Alignment:
Q  1 catctctttaagaaacttgtcctttctctacaaattctaatttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtct 100  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||    
T  387089 catctctttaagaaacttgtccttgctctacaaatgctaatttggtttttctctggtacaccggggcgaggggtgccctgctaatttggtactaaagtct 387188  T
Q  101 ggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtc 200  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  387189 ggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttgagcttttgtttttgtgctcttttggtggatcggaggtc 387288  T
Q  201 gcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttct 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  387289 acgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagggtgttct 387388  T
Q  301 ttggtggtg 309  Q
    |||| ||||    
T  387389 ttgggggtg 387397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 39338992 - 39338729
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||| ||||  ||||||  |||| |||| ||||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||     
T  39338992 atttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcag 39338893  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| |||||||||||||||||||||||| ||  ||||| ||| || ||| || ||||    
T  39338892 ttctttgactcaagttggtttttgggcttt--gtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggt 39338795  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||||   ||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  39338794 gctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgagggtgttctttg 39338729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 10524051 - 10524317
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  || |||  ||||||||| ||||| |||||||| |||  ||||||||||||||||||||||||||| ||||||||||||||    
T  10524051 atttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaa 10524150  T
Q  139 t----tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtc 233  Q
    |    |||||||||||||||||||||||||||||   | ||||||||||| ||||  ||||||||||||||||||  || ||||||||| || ||| ||     
T  10524151 tatattctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtgt-tcggaggtcgcgaggtttgtgatagctgcatgatccttcggtt 10524247  T
Q  234 aggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  10524248 aggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttggagggtgttctttg 10524317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 72 - 304
Target Start/End: Original strand, 7874278 - 7874509
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||| ||||||| |||| |||||||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||     
T  7874278 ggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttttg- 7874376  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    |||||||||| || |||||||||||||||| |||||| ||||| || | ||||||||  || ||| ||| ||||| | ||||||||||||||||||||      
T  7874377 ttttgtgctcattcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcga-atgtggctcagcttgggtgttgaa 7874475  T
Q  272 gtctaggagttttattttgaggg-tgttctttgg 304  Q
    |||| |||||||||||||||||| ||||||||||    
T  7874476 gtcttggagttttattttgagggatgttctttgg 7874509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 67 - 309
Target Start/End: Complemental strand, 14106623 - 14106380
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactca-agttggtttttgggc 165  Q
    |||| |||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||   |||   ||||||||||||     
T  14106623 cgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctctttagatcagttttggtttttgggt 14106524  T
Q  166 ttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggt 265  Q
    ||||||||||||||||||| |||||||| ||||||| |||||| |||||| || ||| |||||| || | | ||| | ||| | ||||||||||||||||    
T  14106523 ttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacga-atgtggctcagcttgggt 14106425  T
Q  266 gttggggtctaggagttttattttga-gggtgttctttggtggtg 309  Q
    ||||  ||||  |||||||||||||| ||||||||||||| ||||    
T  14106424 gttgaagtctgagagttttattttgaggggtgttctttgggggtg 14106380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 84 - 302
Target Start/End: Original strand, 14405197 - 14405414
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctctt 183  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||    
T  14405197 atttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggcttttg-ttttgtgctctt 14405295  T
Q  184 ttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttt 283  Q
    | |||||||| || |||| | |||| ||||| ||||| |||||||  || ||| |||  |||  | |||||||  |||||||||||  |||| |||||||    
T  14405296 tcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcg-catgtggctcgacttgggtgttgaagtctgggagttt 14405394  T
Q  284 tattttgaggg-tgttcttt 302  Q
    ||||||||||| ||||||||    
T  14405395 tattttgagggatgttcttt 14405414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 5254263 - 5254438
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtgga 191  Q
    |||| |||| ||||||||||||||||| |||  ||||||||||||   ||||||  ||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  5254263 ctaaagtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggcttttgtttt-gtgctttttcggtgga 5254361  T
Q  192 tcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttg 269  Q
    |||||||||| |||||| |||||||||||||||||||| ||  || ||| ||||| | ||||||||| ||||||||||    
T  5254362 tcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcga-atgtggctcagtttgggtgttg 5254438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 4471935 - 4472035
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcgga 196  Q
    |||||||||||||||| | |||||||| ||||||||||||| |||||||| ||||||| ||||||||||||   | || ||| |||||||||||| ||||    
T  4471935 gtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctt---tattggtgttcttttggtggaccgga 4472031  T
Q  197 ggtc 200  Q
    ||||    
T  4472032 ggtc 4472035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 17116923 - 17116743
Alignment:
Q  122 tcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgca 220  Q
    ||||||| |||||||| || ||||||||| |||||||||| ||||||   ||||||||| ||| | | ||| ||||||||||||||||  || | || |     
T  17116923 tcaagattgggagtcagtt-tttgactcatgttggtttttaggctttg--ttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctact 17116827  T
Q  221 tgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggag-ttttattttgagggtgttctttg 303  Q
    || ||  || || ||||||||||||  | ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  17116826 tgatccatcggttaggtgctcttcgtaatgtggctcagcttgggtgttggggtctgagagtttttattttgagggtgttctttg 17116743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 10173659 - 10173539
Alignment:
Q  85 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttt 184  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||| ||| | || |||| |||||||| | |||||||||||||  || ||| |||||    
T  10173659 tttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttg--ttggtgttcttt 10173562  T
Q  185 tggtggatcggaggtcgcgaggt 207  Q
     |||| ||||||||||| |||||    
T  10173561 cggtgaatcggaggtcgagaggt 10173539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 1269490 - 1269567
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | ||||||| ||||    
T  1269490 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggatttt 1269567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 22885202 - 22885111
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtgga 191  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||| | |||||||   ||||||| ||| ||||| ||||||    
T  22885202 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg---ttgttttggtgttctttcggtgga 22885111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 16959989 - 16960064
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctt 167  Q
    |||| |||||||||||||||| |||||||||| |||||| |||||| ||||||| |||||||| | ||||||||||    
T  16959989 ctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggctt 16960064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 37770723 - 37770580
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctctt 183  Q
    ||||||| |||| || ||||||||||||||||||||||||  |||| ||||||||||||||   |||| || | |||||||||||| |  ||    ||||    
T  37770723 atttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattctttagatcaattttggttttgggcttttatggtt----tctt 37770628  T
Q  184 ttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcag 231  Q
    | |||| ||||||||||| ||||| |||||||||| ||| || |||||    
T  37770627 tcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcag 37770580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 2062900 - 2062973
Alignment:
Q  96 cgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||||||  |||||||||| |||||||||||||  |||||| |||||||| | ||||||||||||    
T  2062900 cgtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 2062973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 13337286 - 13337358
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||| ||||||||||||||||||||| | ||||| ||||| |||||||||||||||| | |||||| |||||    
T  13337286 gtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttggactttt 13337358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 15126479 - 15126407
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||| |||| ||| | ||||||||||||    
T  15126479 gtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggctttt 15126407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 7460839 - 7460894
Alignment:
Q  250 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgg 304  Q
    ||||||||||||||||||||  |||| ||||||||||||||| |||||||||||||    
T  7460839 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttgg 7460894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 36276240 - 36276178
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 160  Q
    ||||||||||| | || |||||||||| |||||||||||||| ||||||||||||||| |||||    
T  36276240 gtctggtgggctgttcgcttttgattcgagatcgggagtcaa-tctttgactcaagtttgtttt 36276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 7695985 - 7696047
Alignment:
Q  107 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||||||| | | ||||||||| ||||||| |||||||| | ||||||||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggctttt 7696047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 4162089 - 4162052
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  4162089 gtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 16952443 - 16952334
Alignment:
Q  106 gccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgag 205  Q
    |||||||  ||||||||| |||||||||| || ||||||| |||||||| | |||||| | |||  ||| ||| ||||| |||||||||||||| | |||    
T  16952443 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt--tttggtgttctttcggtggatcggaggttgagag 16952346  T
Q  206 gttttggaagct 217  Q
    ||  ||||||||    
T  16952345 gtggtggaagct 16952334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 17023108 - 17022999
Alignment:
Q  106 gccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgag 205  Q
    |||||||  ||||||||| |||||||||| || ||||||| |||||||| | |||||| | |||  ||| ||| ||||| |||||||||||||| | |||    
T  17023108 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt--tttggtgttctttcggtggatcggaggttgagag 17023011  T
Q  206 gttttggaagct 217  Q
    ||  ||||||||    
T  17023010 gtggtggaagct 17022999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 17060414 - 17060305
Alignment:
Q  106 gccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgag 205  Q
    |||||||  ||||||||| |||||||||| || ||||||| |||||||| | |||||| | |||  ||| ||| ||||| |||||||||||||| | |||    
T  17060414 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt--tttggtgttctttcggtggatcggaggttgagag 17060317  T
Q  206 gttttggaagct 217  Q
    ||  ||||||||    
T  17060316 gtggtggaagct 17060305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattcttt 144  Q
    ||||||| |||  ||||||||||| |||| |||||||||| ||||||||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 27739987 - 27740027
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  27739987 gtctggtgggccgatcgcttttgattcaagatcgagagtca 27740027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 33788701 - 33788653
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||||||||||| |||||||||| |||| |||||||| |||||||    
T  33788701 gtctggtgggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 18681080 - 18681151
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    ||||||||||||  | |||||||| ||||||||||||| |||| ||  ||||||| | ||||||||||||||    
T  18681080 tggtgggccgattgcatttgattcgagatcgggagtcagttctctggttcaagtttggttttgggcttttgt 18681151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 17079190 - 17079281
Alignment:
Q  106 gccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggt 199  Q
    |||||||  ||||||||| |||||||||| || ||||||| |||||||| | |||||| | |||  ||| ||| ||||| ||||||||||||||    
T  17079190 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattt--tttggtgttctttcggtggatcggaggt 17079281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 34230219 - 34230285
Alignment:
Q  103 tgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||| |||| |||| ||||| ||||||| |||||||  ||||||| | ||||||||||||    
T  34230219 tgggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttt 34230285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 82 - 309
Target Start/End: Original strand, 43012372 - 43012598
Alignment:
Q  82 taatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctc 181  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagcttttgtttt-gtgctc 43012470  T
Q  182 ttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagt 281  Q
    ||| |||| ||| |||||||||||||| |||||| |||||| || ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  43012471 tttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagt 43012570  T
Q  282 tttattttgagggtgttctttggtggtg 309  Q
    |||| |||||||||||||||||| ||||    
T  43012571 tttaatttgagggtgttctttggaggtg 43012598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 72 - 302
Target Start/End: Original strand, 19176489 - 19176720
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||     
T  19176489 ggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttttg- 19176587  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttc--attcagtcaggtgctcttcgataggtggctcagcttgggtgttg 269  Q
     |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||   ||| |||||||||||||||  | |||||||||||||||||| |    
T  19176588 atttgtgctcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcg 19176687  T
Q  270 gggtctaggagttttattttgagggtgttcttt 302  Q
    |||||| || |||||||||||||||||||||||    
T  19176688 gggtctgggtgttttattttgagggtgttcttt 19176720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 20611737 - 20611999
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||| ||||||  || || ||||||||||| ||||||||| |||||||||||||     
T  20611737 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcag 20611836  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||| |||||||||||||||||||   ||  ||||||||| |||||||||||||||||||||||| ||  ||||| ||| || ||| || ||||    
T  20611837 ttctttgacttaagttggtttttgggctttgcgtt--gtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggt 20611934  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  20611935 gctcttcgaaatgtgactcagcttgggtgtt-gggtctaggagttttattctgagggtgttctttg 20611999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 303
Target Start/End: Complemental strand, 9584147 - 9583918
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||||||||| |||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||     
T  9584147 ggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttg- 9584049  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    ||||||| ||||| |||||||||||||| |||||||| | ||||  ||| | || ||| |||||| |||||||||   ||||||| |||||||| |||||    
T  9584048 ttttgtgatctttcggtggatcggaggttgcgaggttgt-gaagtcgcacgatccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggg 9583950  T
Q  272 gtctaggagttttattttgagggtgttctttg 303  Q
    |||| ||||||||||||||||| |||||||||    
T  9583949 gtctgggagttttattttgaggatgttctttg 9583918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 294
Target Start/End: Complemental strand, 40023666 - 40023446
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||| |||| ||  ||| ||||||||| ||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||     
T  40023666 ggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggcttttg- 40023568  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    ||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||| || ||| ||| ||||| | ||||||||||| ||||||||      
T  40023567 ttttgtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcga-atgtggctcagctagggtgttgta 40023469  T
Q  272 gtctaggagttttattttgaggg 294  Q
    |||| ||||||||||||||||||    
T  40023468 gtctgggagttttattttgaggg 40023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 2392632 - 2392370
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    ||||||||| |||||||  ||||||  |||| |||| ||||||||||||||||||  | ||||||| ||||||||||||||||| |||| || ||||| |    
T  2392632 tttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagt 2392533  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtg 238  Q
    |||||| || |||||||||||||||||||   | ||||||||||| |||||||||||||||||||||||| ||  ||||||||| || ||| || |||      
T  2392532 tctttgtcttaagttggtttttgggcttt--gtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggat 2392435  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| | | |||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  2392434 ctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttg 2392370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 67 - 309
Target Start/End: Complemental strand, 23328449 - 23328208
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| |||| | ||||||| |||| || |||||| ||||||||||||||||| ||||||||||| |  | |||| |||||||||||||||| |||    
T  23328449 cgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggctcaagttggtttttgagct 23328350  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtg 266  Q
    |||| ||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||||| || ||| ||| ||||| | |||||||||||||||||    
T  23328349 tttg-ttttgtgctctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcga-atgtggctcagcttgggtg 23328252  T
Q  267 ttggggtctaggagttttattttgag-ggtgttctttggtggtg 309  Q
    |||  |||| |||||||||||||||| |||||||||||| ||||    
T  23328251 ttgaagtctgggagttttattttgagtggtgttctttgggggtg 23328208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 303
Target Start/End: Original strand, 45163835 - 45164072
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtg--ggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 164  Q
    |||| |||| ||||||||||||||||||  |||| |||  ||||||||||||||||||| ||||| | ||||| || |||| || |||||||||||||||    
T  45163835 cgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttggg 45163934  T
Q  165 cttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgg 263  Q
    ||||   | ||||||||||| ||||||||||||||| ||| ||||  || ||||||||| || ||| || ||||||||||||| | |||||| |||||||    
T  45163935 ctttg--tgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgg 45164032  T
Q  264 gtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  45164033 gtgttggggtctaggagttttattttgagggtgttatttg 45164072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 303
Target Start/End: Original strand, 17550969 - 17551169
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcgga 196  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||   | ||||||||||| | || ||||||    
T  17550969 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt--gtgttgtgctctttcgatgcatcgga 17551066  T
Q  197 ggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggt 295  Q
    ||||||||||||| ||  ||||||||| |      || ||||||||||||| | ||||||||| ||||||||||||||||  ||||||||||||||||||    
T  17551067 ggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttgagggt 17551161  T
Q  296 gttctttg 303  Q
    ||||||||    
T  17551162 gttctttg 17551169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 116 - 303
Target Start/End: Original strand, 47235729 - 47235915
Alignment:
Q  116 tttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-a 214  Q
    |||||||| |||||| |||||  |||||||||| ||||||||||||||||||| || ||| |||||||| |||||||| |||||||||||||||  || |    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggcttt-gtgttt-tgctctttcggtggatcagaggtcgcgaggtttgtgata 47235826  T
Q  215 gctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||| || ||| || ||||||||||||| | |||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  47235827 gctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttg 47235915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 34475880 - 34475620
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    |||| ||||||||||||  ||||||  |||| |||| |||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||     
T  34475880 tttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaa 34475781  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtg 238  Q
    |||| || | |||||| ||||||||||||   | ||||||||||| ||||||| |||||||||||||||| ||  ||||| ||| || ||| || |||||    
T  34475780 tcttggaattaagttgatttttgggcttt--gtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtg 34475683  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||| | ||| |||||||| ||||||||||| |  ||||||  |||| |||||||||||||    
T  34475682 ctcttcgaaatgtgactcagcttaggtgttggggtatgagagttt--ttttaagggtgttctttg 34475620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 45398778 - 45398939
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| |||||| ||||||   ||| ||||||||| ||||||||||||||||| |||||| ||||||  ||||||| | |||||||||||||||||    
T  45398778 cgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggct 45398877  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattc 229  Q
    |||| |||| |||||||| | |||||||||||||| |||||| ||||||||||||||||||||    
T  45398878 tttg-ttttatgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattc 45398939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 303
Target Start/End: Original strand, 31482880 - 31483100
Alignment:
Q  81 ctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgct 180  Q
    |||||||||| |||  |||||| |||| ||||||||||||||| ||||||||| |||| ||||  | | |||||| ||||||||||||   | |||||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaaaattaagttgatttttgggcttt--gtgttgtgct 31482977  T
Q  181 cttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctagga 279  Q
    |||| ||||||| |||||||||||||||| ||  ||||||||| || ||| || ||||||||||||| | |||||||||||| ||||||||||| |  ||    
T  31482978 ctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgaga 31483077  T
Q  280 gttttattttgagggtgttctttg 303  Q
    ||||| |||| |||||||||||||    
T  31483078 gtttt-ttttaagggtgttctttg 31483100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 2394379 - 2394134
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    ||||||||| |||||||  ||||||  |||| |||| ||||||||||||||||||  | ||||||| ||||||||||||||||| |||| || ||||| |    
T  2394379 tttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagt 2394280  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtg 238  Q
    |||||| || |||||||||||||||                   | |||||||||||||||||||||||| ||  ||||||||| || ||| || |||      
T  2394279 tctttgtcttaagttggtttttggg-------------------tcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggat 2394199  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| | | |||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  2394198 ctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttg 2394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 303
Target Start/End: Original strand, 53247947 - 53248118
Alignment:
Q  132 gagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattca 230  Q
    ||||||||||||||| |||||||||||||| |  |||||| || ||||||||| ||||||| ||||||||||||||||  || || || ||| || |||     
T  53247947 gagtcaattctttgattcaagttggtttttaga-ttttgtgtt-gtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcg 53248044  T
Q  231 gtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggag-ttttattttgagggtgttctttg 303  Q
    || | ||||||||||| | ||||||||| ||||||||||||||||  ||| |||||||||||| ||||||||||    
T  53248045 gttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttgagagtgttctttg 53248118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 14755339 - 14755286
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14755339 ctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 47945713 - 47945790
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||| || |||| |||||||| | ||||||||||||    
T  47945713 ctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggctttt 47945790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 21342603 - 21342735
Alignment:
Q  153 ttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtg 252  Q
    ||||||||| |||||||||||| ||||||||| | |||||| ||||||| |||||| |||||||||| ||||||||| || ||  ||| ||||| | |||    
T  21342603 ttggtttttaggcttttgtttt-gtgctctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcga-atgtg 21342700  T
Q  253 gctcagcttgggtgttggggtctaggagttttatt 287  Q
    ||||  |||||||||||  ||||  ||||||||||    
T  21342701 gctcgacttgggtgttgaagtctgagagttttatt 21342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 33144018 - 33143899
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgggcttttgtttttgtgctcttttggtggatcgg 195  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||||||  ||||| || ||||||||||||   ||| ||   ||||| |||||||| |    
T  33144018 gtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctt---tttatggtttctttcggtggatcag 33143922  T
Q  196 aggtcgcgaggttttggaagctg 218  Q
    ||||||||||||  |||||||||    
T  33143921 aggtcgcgaggtggtggaagctg 33143899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 37123397 - 37123466
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||  |||| || | ||||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggctttt 37123466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 39021342 - 39021273
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||||||||||||||||| || |||||||||| |||||||  ||||||  | ||||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggctttt 39021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 1652979 - 1652883
Alignment:
Q  73 gtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| || ||||||| || |  ||| |||||||||||||||||||||| ||||| ||||| | |||||||  ||||||| | ||||||||||||    
T  1652979 gtgtccttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggctttt 1652883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 14879442 - 14879486
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtc 136  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  14879442 ctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 14879486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 14193939 - 14194009
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| |||| |||||| || ||||||||||||||||| |||| |||||||  ||||||| ||||||||    
T  14193939 atttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 30127274 - 30127332
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattct-ttgactcaagtt 154  Q
    |||||||| ||||||| |||||||||| ||||||||||||| |||| ||||||||||||    
T  30127274 gtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 30352356 - 30352305
Alignment:
Q  250 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||||||||||||||||||||| |||||||  |||| |||||||||||||    
T  30352356 gtggctcagcttgggtgttggggtctcggagttt--tttttagggtgttctttg 30352305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 5556582 - 5556639
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||  |||||||    
T  5556582 gtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 20710777 - 20710740
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  20710777 gtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 2782138 - 2782081
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||||| |||||||||||||||  |||||||||| || || ||||||| |||||    
T  2782138 gtctggtgggacgatcacttttgattttagatcgggagccagttttttgactaaagtt 2782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 30935456 - 30935387
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||| |||| |||||||||||||||||||||| | || ||||  ||||||| | ||||| ||||||    
T  30935456 tggtgggctgatcgcttttgattcaagatcgggagttagttatttggttcaagtttggttttgagctttt 30935387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 823498 - 823434
Alignment:
Q  103 tgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctt 167  Q
    ||||||||||||||||||||| |||||| |||||| || ||| | |||||||   ||||||||||    
T  823498 tgggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggctt 823434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 24099396 - 24099360
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcggga 133  Q
    ||||||||||||||||||||||||||| | |||||||    
T  24099396 gtctggtgggccgatcacttttgattcgatatcggga 24099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 31424248 - 31424304
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagt 153  Q
    ||||||| ||||| || |||||||||| ||||||||||||| | |||||| ||||||    
T  31424248 gtctggtaggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 43 - 309
Target Start/End: Original strand, 3867073 - 3867339
Alignment:
Q  43 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 141  Q
    |||||||||||||||  |||| || |||  |||| |||||||||||||||||||  | |||||||| ||||||||||||||| ||| ||||||||| |||    
T  3867073 tggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagttc 3867172  T
Q  142 tttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctc 241  Q
    ||||||||||||||||||||||||||||| ||| ||||||||  |||||||| |||||||||||||| ||||| ||||||| || ||  |||||||||||    
T  3867173 tttgactcaagttggtttttgggcttttgcttt-gtgctcttgcggtggatcagaggtcgcgaggttatggaaactgcatgatcctttggtcaggtgctc 3867271  T
Q  242 ttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttggtggtg 309  Q
    ||||||| ||||||||||||||||||||| || | | |||||||||||||||||||||||||| ||||    
T  3867272 ttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtg 3867339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 38306215 - 38306478
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  || |||  |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||     
T  38306215 atttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcag 38306314  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| | ||| |||||||||||||||||| ||  ||||||||| || ||| || | ||    
T  38306315 ttctttgactcaagttggtttttgggcttt--gtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagt 38306412  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38306413 gctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgagggtgttctttg 38306478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 39 - 303
Target Start/End: Complemental strand, 5860416 - 5860152
Alignment:
Q  39 aatttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    ||||||||||||||||  |  ||||||  |||| |||| ||||||||||||||||||  ||| |||||||| ||| |||||||||| |||||||||||||    
T  5860416 aatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtca 5860317  T
Q  138 attctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcagg 236  Q
    |||||||||| ||||||||||||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  ||||||||| || |||||| |||    
T  5860316 attctttgacgcaagttggtttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttagg 5860219  T
Q  237 tgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  5860218 tgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttcagggtgttctttg 5860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 47326012 - 47325749
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| | ||||||||||||||||  |||||||||||||||| |||||||||  |||||||||||||     
T  47326012 atttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcag 47325913  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 237  Q
     |||||||||||||||||||||||||||||   |  |||||||||| | ||||||||||||||||||||||  || ||||| ||| || ||| || ||||    
T  47325912 ctctttgactcaagttggtttttgggctttg--tgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggt 47325815  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47325814 gctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttg 47325749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 47 - 309
Target Start/End: Original strand, 33435070 - 33435332
Alignment:
Q  47 ttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||||||  ||||||  |||| |||| |||| |||||||||||||| |||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  33435070 ttttctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttg 33435169  T
Q  146 actcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcg 245  Q
     |||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||||||||| || ||||| |||| || ||| |||||||||||||||    
T  33435170 tctcaagttcgtttgtgggcatttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctcttcg 33435268  T
Q  246 ataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttggtggtg 309  Q
    |   |||||||||||||| ||||| |||||  ||||||| ||||||||||||||||||| ||||    
T  33435269 aattgtggctcagcttggttgttgaggtctgagagttttcttttgagggtgttctttgggggtg 33435332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 41089875 - 41089612
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  | ||||  |||| ||||  |||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||     
T  41089875 atttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcag 41089776  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 238  Q
     ||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |  |||  | |||||    
T  41089775 ctctttgactcaagttggtttttgagcttttg-ttttgtgatctttcggtggatcggaggtcgcgaggttgtggaagctgcatgattcttcgttgaggtg 41089677  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||   || |||||   |||||||| |||||| |||||||||||||||||||||||||||    
T  41089676 ctcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctttg 41089612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 3419783 - 3419519
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||| ||||||  |||| |||| |||| |||||||||||||| || |||||||| ||||||||||||||| |||||||||||||     
T  3419783 atttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcag 3419684  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
     |||||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||| | |||||| ||  |||||| || || ||| || ||||    
T  3419683 ctctttgactcaagttggtttttgggc-tttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggt 3419585  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    || ||||||   |||||| | ||||||||||||||| | ||||||||||||| |||||||||||||    
T  3419584 gcgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttctttg 3419519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 67 - 303
Target Start/End: Original strand, 37794971 - 37795206
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| ||||||||||||||| ||  || |||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  37794971 cgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggct 37795070  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggt 265  Q
    ||   | ||||||||||| ||||| |||||||||||||||||| ||  ||||||||| || ||| || |||||||||||||   ||||||||||||||||    
T  37795071 tt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggt 37795168  T
Q  266 gttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||| |  ||||||||||||||||||||||||||    
T  37795169 gttggggtttgagagttttattttgagggtgttctttg 37795206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 77 - 304
Target Start/End: Original strand, 34389954 - 34390180
Alignment:
Q  77 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttg 176  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||||||||||||||||  |||||    
T  34389954 cctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggctttt-attttg 34390052  T
Q  177 tgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtcta 276  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||||||  | ||| ||| ||| | | |||||||| |||||||||||  ||||     
T  34390053 tgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttc-aaatgtggctcaacttgggtgttgtagtctg 34390151  T
Q  277 ggagttttattttga-gggtgttctttgg 304  Q
    ||||||||||||||| |||||||||||||    
T  34390152 ggagttttattttgaggggtgttctttgg 34390180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 67 - 309
Target Start/End: Complemental strand, 35745926 - 35745680
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| ||| ||||||| || |||| ||||| ||||| ||||||||||||||| ||||||| |||||  |||||| ||||||||||||||||||||    
T  35745926 cgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggct 35745827  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgata---ggtggctcagcttgg 263  Q
    |||||||||||||||||| ||||||| |||||| | |||||| |||||||||||||||||||| || ||| ||| |||||||    ||||||||||||||    
T  35745826 tttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgg 35745727  T
Q  264 gtgttggggtctaggagttttattttgag-ggtgttctttggtggtg 309  Q
    ||||||  ||||    ||||||||||||| |||||||||||| ||||    
T  35745726 gtgttgaagtctgactgttttattttgagaggtgttctttgggggtg 35745680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 10244136 - 10244399
Alignment:
Q  40 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||   ||| |||| |||||||||||||| |||   |||||||||||||||||||||||||| |||||||||||||     
T  10244136 atttggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcag 10244235  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||| |||||||| ||||   | |||||||||||  |||| |||||||||||||||||| ||  || |||||| || ||| || ||||    
T  10244236 ttctttgactcaagttagtttttggccttt--gtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggt 10244333  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| ||   ||||||||||||||||||| |||||| ||| ||||| || ||||||| ||||||    
T  10244334 gctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagttggagggtggtctttg 10244399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 303
Target Start/End: Complemental strand, 44353623 - 44353427
Alignment:
Q  107 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgagg 206  Q
    ||||||||||||||||  ||||||||||||| |||||||||| | |||||||||||||||||   | ||||||||||| |||||||||||||||||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggcttt--gtgttgtgctctttcggtggatcggaggtcgcgagg 44353526  T
Q  207 ttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttctttg 303  Q
    ||| ||  ||||||||| || ||| || ||||||||||||| | ||| | | |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  44353525 tttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttg 44353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 6584891 - 6585046
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  |||||| || |||||||||||||||||    
T  6584891 cgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 6584990  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgt 223  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||| ||||||||    
T  6584991 tttg-ttttgtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 6585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 48162083 - 48161964
Alignment:
Q  109 gatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggtt 208  Q
    ||||| ||||||||| ||||||| | ||| ||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  48162083 gatcatttttgattcgagatcggaaatcagttctttggctcaaattgatttttggacttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 48161984  T
Q  209 ttggaagctgcatgttcatt 228  Q
     |||||| ||| ||||||||    
T  48161983 gtggaagttgcttgttcatt 48161964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 25160770 - 25161011
Alignment:
Q  41 tttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    |||||||||||||||||  |||| || |||| |||| |||||||||||||| |||  ||||||||| ||||| ||||||||||| ||||||| ||||||     
T  25160770 tttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtcaaa 25160869  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtg 238  Q
    ||||  | | |||||||||||||||||     | ||||||||||| ||||||| ||||||| | |||||| ||  |||||  || || |||||| |||||    
T  25160870 tcttgaaattaagttggtttttgggct----gtgttgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtg 25160965  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagtttt 284  Q
    ||||| || | |||||||| ||| | |||||||||||  |||||||    
T  25160966 ctcttggaaatgtggctcaacttagatgttggggtctgagagtttt 25161011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 294
Target Start/End: Original strand, 8745110 - 8745358
Alignment:
Q  43 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 141  Q
    |||| |||||||||| ||||| ||  ||| |||| ||| || ||||||| ||||  |||||||||||||||||||||||||| ||||||||| ||| |||    
T  8745110 tggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttc 8745209  T
Q  142 tttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctc 241  Q
     |||  ||||||| | ||||||||||   ||| ||   ||||| |||||||||||||||| |||||| ||||||||||||| || |||||  ||| |||     
T  8745210 gttggatcaagtttggttttgggctt---tttatggtttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagctt 8745306  T
Q  242 ttcgataggtggctcagcttgggtgttggggtctaggagttttattttgaggg 294  Q
    ||||  | |||||||||||| ||||||   | || ||||||| ||||||||||    
T  8745307 ttcg-gatgtggctcagctttggtgttcaagactgggagtttaattttgaggg 8745358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 31972089 - 31971998
Alignment:
Q  212 gaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||| |||||| || ||| || ||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  31972089 gaaggtgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttg 31971998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 9349761 - 9349832
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttt 168  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||||| | |||||||||||    
T  9349761 gtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 1320793 - 1320863
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||    
T  1320793 atttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 24324864 - 24324810
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  24324864 tggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 42533334 - 42533264
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| || |||||    
T  42533334 atttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtt 42533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 6716805 - 6716748
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  6716805 gtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 13311851 - 13311908
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||    
T  13311851 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 3478352 - 3478471
Alignment:
Q  85 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttt 184  Q
    |||||| |||| || |||||||||||||||||||||||| ||||||||||| | ||||||| |||||| |   ||||||||||   | || ||| |||||    
T  3478352 tttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttttgggctt---tgttggtgttcttt 3478448  T
Q  185 tggtggatcggaggtcgcgaggt 207  Q
     |||||||||||| ||| |||||    
T  3478449 cggtggatcggagatcgagaggt 3478471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 12480901 - 12480970
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||  ||||||| | |||| |||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggctttt 12480970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 38485568 - 38485608
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  38485568 gtctggtgggccgatcacttttgattcgagatcgggagtca 38485608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 16829018 - 16828948
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| |||| ||||||| ||| ||||||||||| ||| ||||||  ||||| ||||||||||||||||    
T  16829018 atttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 16954652 - 16954722
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| |||| ||||||| | ||||||||||||| ||| ||||||  ||||| ||||||||||||||||    
T  16954652 atttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 23983207 - 23983285
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgttttt 175  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||| ||  |||||||| | ||||||| |||| |||||    
T  23983207 gtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttgggttttttttttt 23983285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 44755581 - 44755663
Alignment:
Q  40 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgatt 122  Q
    ||||||| ||||||||||  |||| |  ||| |||| ||| || ||||||| |||| ||||||||||||||||||||||||||    
T  44755581 atttggtgtttctctggtgtaccgtggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 46133360 - 46133274
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgggctttt 169  Q
    ||||||| || | |||||||| ||||||| |||||||||  ||||||||||||| |||| ||  ||||| |||||||||||||||||    
T  46133360 atttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggctttt 46133274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 46262188 - 46262151
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  46262188 gtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 6585045 - 6585089
Alignment:
Q  250 gtggctcagcttgggtgttggggtctaggagttttattttgaggg 294  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||    
T  6585045 gtggctcagcttgggtgttgaagtctgggagttttattttgaggg 6585089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 17802885 - 17802851
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgg 131  Q
    ||||||||||||||||||||||||||| |||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcgg 17802851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 3419313 - 3419260
Alignment:
Q  250 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| | ||||||||||||||| | ||||||||||||| |||||||| ||||    
T  3419313 gtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttg 3419260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 11379196 - 11379139
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||| ||||||| |||||||||| ||||||||||||| | |||||  |||||||    
T  11379196 gtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 27993605 - 27993568
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  27993605 gtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 35206762 - 35206725
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  35206762 gtctggtgggccgatcacttttgatccgagatcgggag 35206725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 8254981 - 8255244
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||     
T  8254981 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcag 8255080  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||| ||  |||||| || ||  ||||| ||||    
T  8255081 ttctttgactcaagttggtttttgggcttt--gttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggt 8255178  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||  | ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  8255179 gctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttg 8255244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 8268399 - 8268662
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||     
T  8268399 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcag 8268498  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||| ||  |||||| || ||  ||||| ||||    
T  8268499 ttctttgactcaagttggtttttgggcttt--gttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggt 8268596  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||  | ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  8268597 gctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttg 8268662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 30964395 - 30964654
Alignment:
Q  40 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  |||| || |||| |||| ||||||||||||||||||   |||| |||||||||||||||||||||  |||||||||||      
T  30964395 atttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccg 30964494  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||| ||  ||||||||| |||||| || ||||    
T  30964495 ttctttgactcaagttggtttttggg-ttttg-tgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggt 30964592  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | ||||| | ||||||||    ||  || |||||||||||||||||||||||||||    
T  30964593 gctcttcgaaatgtggccctgcttgggt----ggtactgggagttttattttgagggtgttctttg 30964654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 294
Target Start/End: Complemental strand, 31050761 - 31050535
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| ||| || ||||||| |||| ||||||||||||||||||||||||||| ||||||| ||| |  ||||||  |  ||||||||||||||||    
T  31050761 cgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggct 31050662  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtg 266  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||| || ||| ||| ||||||  |||||| ||||||||||    
T  31050661 tttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgat-tgtggctaagcttgggtg 31050563  T
Q  267 ttggggtctaggagttttattttgaggg 294  Q
    |||  |||| |  |||||||||||||||    
T  31050562 ttgaagtctggctgttttattttgaggg 31050535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 294
Target Start/End: Original strand, 2825776 - 2825990
Alignment:
Q  78 ctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgt 177  Q
    ||||| ||||||| |||| ||| ||||||||||||| ||||||||| ||||||||| |||  |||||| |||||  ||||||||||||||||  ||||||    
T  2825776 ctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggctttt-attttgt 2825874  T
Q  178 gctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctag 277  Q
     |||||| |||||||||||||||  |||||| |||||||||||||||||||| || ||| ||| ||||| |||||| |||| ||||||||||  || | |    
T  2825875 actctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcga-aggtggttcagtttgggtgttgaagtttgg 2825973  T
Q  278 gagttttattttgaggg 294  Q
    |||||||||||||||||    
T  2825974 gagttttattttgaggg 2825990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 4305679 - 4305941
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    |||| |||||||||||||  ||||||  | || |||| ||||||||||||||||||  |||||||||| |||||||||||||||| ||||||||||| |     
T  4305679 atttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttag 4305778  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||| ||||||||||||||| ||||||   | |||||||||||||||||  | |||||||| |||||| ||  | ||||||| || ||| || ||||    
T  4305779 ttctttgtctcaagttggtttttaggcttt--gtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggt 4305876  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||||| ||||||| || |||| | ||||||||||||| |||||| ||||||    
T  4305877 gctcttcga-atgtggctcaacttgggtatttgggtttgggagttttattttcagggtgatctttg 4305941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 102 - 303
Target Start/End: Complemental strand, 30167628 - 30167428
Alignment:
Q  102 gtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcg 201  Q
    ||||| |||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||| |||   | ||||||||||| |||||  |||||||||    
T  30167628 gtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggggttt--gtgttgtgctctttcggtggtccggaggtcg 30167531  T
Q  202 cgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttct 300  Q
    |||||||| ||  |||||||||  | ||| || | | ||||||||| | ||||| || ||||||||||||||| | ||||||||||||||||||||||||    
T  30167530 cgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttgagggtgttct 30167431  T
Q  301 ttg 303  Q
    |||    
T  30167430 ttg 30167428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 35341391 - 35341213
Alignment:
Q  113 acttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgg 212  Q
    ||||||||| | ||||||| |||||  |||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||| |||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttggccttttgtttt-gtgctctttcggtggatcggagttcgagaggttgtgg 35341293  T
Q  213 aagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgaggg 294  Q
    |||||||||||||||||||| | | ||| ||||| | ||||||||| || |||||||  || | ||||||||||||||||||    
T  35341292 aagctgcatgttcattcagttatgagcttttcga-atgtggctcag-tttggtgttgaagtttgggagttttattttgaggg 35341213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 25753171 - 25753285
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctctt 183  Q
    ||||||| |||| |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| | |||||||||||  || ||||  ||||    
T  25753171 atttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggcttt--ttattgt-ttctt 25753267  T
Q  184 ttggtggatcggaggtcg 201  Q
    | ||||||||||||||||    
T  25753268 tcggtggatcggaggtcg 25753285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 38637301 - 38637171
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcgga 196  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||| || |||| || ||||||||||   ||| ||   |||||||||||||||||    
T  38637301 gtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtagg-ttttgggctt---tttatggtttcttttggtggatcgga 38637206  T
Q  197 ggtcgcgaggttttggaagctgcatgttcattcag 231  Q
    ||||| |||||  ||||||||| ||| || |||||    
T  38637205 ggtcgagaggtggtggaagctgaatgatctttcag 38637171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 8706061 - 8706008
Alignment:
Q  250 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttg 8706008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 22811242 - 22811157
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||  ||| ||||||||||||||||| |||| |||| ||||||||||||| ||||||| |||||||| | |||| |||||||    
T  22811242 atttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtttggttttaggctttt 22811157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 40813850 - 40813797
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactca 150  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  40813850 gtctggtgggccgatcacttttgattcgagatcgggagccaattttttgactca 40813797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 53823503 - 53823418
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||  ||| ||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||| | ||||||| ||||    
T  53823503 atttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggttttt 53823418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 38929839 - 38929911
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||| ||||||||||||||||||||| |||||  |||||| ||||||| |||||||| | ||||||||||||    
T  38929839 gtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggctttt 38929911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 39421080 - 39421038
Alignment:
Q  99 ctggtgggccgatcacttttgattcaagatcgggagtcaattc 141  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  39421080 ctggtgggccgatcacttttgattcgagatcgggagtcaattc 39421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 36962684 - 36962626
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttgg 156  Q
    ||||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||||    
T  36962684 gtctggtgggccgattacttttgattcgagatcaggagtc-agtctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 39041343 - 39041285
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttg 155  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||  | |||||||||||    
T  39041343 gtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 46698854 - 46698784
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgggct 166  Q
    |||||||||||||||  |||||||||| ||||||||||||| |||||||  ||||| || |||||||||||    
T  46698854 gtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggct 46698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 6600014 - 6599957
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||||||||||| |||||||||  ||||||||||||  |||||||| |||||||    
T  6600014 gtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagtt 6599957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 16501746 - 16501815
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||| |||||||||| |||||||||||||  ||||||  || |||| | ||||||||||||    
T  16501746 tggtgggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggctttt 16501815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 21387273 - 21387216
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||||| ||||||||||||||||| ||||||| ||||| ||||| || |||||||    
T  21387273 gtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 35800488 - 35800573
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| || | ||||||||  |||||| |||||||||| ||||||| ||||| |||||||| || |||| | ||||||||||||    
T  35800488 atttggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggctttt 35800573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 49747526 - 49747611
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| |||||||| |||||||||||||||||  |||||| |||||| ||||||   ||||||| | ||||| ||||||    
T  49747526 atttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttttgatcaagtttggttttgagctttt 49747611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 28966879 - 28966951
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| || |||||  ||||||||| |||| |||||||| ||||||| |||||||| | ||||||||||||    
T  28966879 gtctggtagggcgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggttttgggctttt 28966951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 2061812 - 2061734
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttg 170  Q
    |||| ||||||||||| ||||||||||||||| |||| | |||||| |||||||  |||  || | |||||||||||||    
T  2061812 ctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttggatcagttttgattttgggcttttg 2061734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 53756768 - 53756802
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgg 131  Q
    ||||||||||||||||||||||||||| |||||||    
T  53756768 gtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 2792335 - 2792286
Alignment:
Q  105 ggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||||||||||||||| ||||||| ||||| ||  ||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 24740172 - 24740103
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||||||||||||||| ||| | |||||||||||||||||| || ||||  |||| || | |||||||||    
T  24740172 gtctggtgggccgatcgcttataattcaagatcgggagtcagttatttggttcaaatttggttttgggct 24740103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 37707424 - 37707392
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatc 129  Q
    ||||||||||||||||||||||||||| |||||    
T  37707424 gtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 41118024 - 41117964
Alignment:
Q  109 gatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||||||||| ||||||| ||| | ||||||| ||||| || | ||||||||||||    
T  41118024 gatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttt 41117964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 24995522 - 24995258
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  || |||  |||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  24995522 atttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 24995423  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | |||||||||||  |||| || ||||||||||||||| ||  ||||||||| || ||| || ||||    
T  24995422 ttctttgactcaagttggtttttgggcttt--gtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 24995325  T
Q  238 gctcttcgataggtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24995324 gctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgagggtgttctttg 24995258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 31207488 - 31207226
Alignment:
Q  40 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  31207488 atttggtttttctctggtgtaccaggggcgag-ggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 31207390  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||||| ||||||| |||   | ||||||| ||| |||||||||||||||||||||||| ||  ||||| |||  | ||| || ||||    
T  31207389 ttctttgactcaagttggattttgggattt--gtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggt 31207292  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  31207291 gctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttgagggtgttctttg 31207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 9519453 - 9519717
Alignment:
Q  40 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||   ||| |||| ||||||||||||||||||  |||| |||||||||||| ||||||||| |||||||||||||     
T  9519453 atttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcag 9519552  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| ||||| |||||||| |||| |||| ||  ||||||||| |||||| || ||||    
T  9519553 ttctttgactcaagttggtttttgggcttt--gtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggt 9519650  T
Q  238 gctcttcgataggtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| |  |||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  9519651 gctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttattttgagggtgttctttg 9519717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 296
Target Start/End: Original strand, 36630791 - 36631047
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||| ||||  ||||||  |||| |||| |||||||||||||| |||| |||||||||||||||||||||| |||| |||||||| ||||     
T  36630791 atttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcag 36630890  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 238  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||| ||||||||| || ||| ||||||||    
T  36630891 ttctttgactctagtttgtttttgggcttttg-ttttgtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatgatccttcggtcaggtg 36630989  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtg 296  Q
    |||||||| | |||||||| ||||| ||| |||||||  | |||||| |||| |||||    
T  36630990 ctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgttttagtttgggggtg 36631047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 37986985 - 37986722
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||  ||  |||||||||||| |||| ||||||||| |||||||||||||     
T  37986985 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcag 37986886  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||||||||||| |||||   | ||||||||||| ||||| |||||||||||||||||| ||  |||||| || || ||| || ||||    
T  37986885 ttctttgactcaagttggtttttgtgcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggt 37986788  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||||||||||||||||  ||||| |||||||||||| ||||||||||||||    
T  37986787 gctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttggagggtgttctttg 37986722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 32066422 - 32066159
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||| ||  ||||||  |||| |||| |||||||||||||| |||  ||||||||||||||||||||||||||| | |||||||||||     
T  32066422 atttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcag 32066323  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
     |||||||||| ||||||||||||||||||   | ||||||||||| ||||| || ||||| ||||||||| ||  ||||||||| |||||| || || |    
T  32066322 ctctttgactccagttggtttttgggcttt--gtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagat 32066225  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| || | |||| |||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  32066224 gctctttgaaatgtggttcagcttgggtgttggggtctgagagttttatttggagggtgttctttg 32066159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 34389132 - 34388870
Alignment:
Q  40 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||  ||||||     
T  34389132 atttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcag 34389033  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | ||||||| ||| ||||||||| |||||| ||||||| ||  ||||   || || |||||| ||||    
T  34389032 ttctttgactcaagttggtttttgggcttt--gtgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagct-agtgatccttcagttaggt 34388936  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    | |||||   | |||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  34388935 gttcttcatcatgtggctcagcttgggtgttggggtatgagagttttattttgagggtgttctttg 34388870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 20138448 - 20138644
Alignment:
Q  107 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgagg 206  Q
    ||||||||||||||||  ||||||||||||| |||||||||| | |||||||||||||||||   | ||||||||||| |||||||||||||||||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggcttt--gtgttgtgctctttcggtggatcggaggtcgcgagg 20138545  T
Q  207 ttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttctttg 303  Q
    ||| ||  ||||||||| || ||| || ||||||||||||| | ||| | | |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  20138546 tttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttg 20138644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 67 - 302
Target Start/End: Complemental strand, 15821478 - 15821244
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| |||||| ||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||  ||||||||| | |||||||||||||||    
T  15821478 cgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggct 15821379  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtg 266  Q
    |||| |||||||||||||  ||||||| ||||||| |||||| ||||| |  | ||||||||  || ||| ||| ||||| | ||||||||||| || ||    
T  15821378 tttg-ttttgtgctctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagcttttcga-atgtggctcagctcggatg 15821281  T
Q  267 ttggggtctaggagttttattttgagg-gtgttcttt 302  Q
    |||  |||| ||||||||||||||||| |||||||||    
T  15821280 ttgaagtctgggagttttattttgaggagtgttcttt 15821244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 303
Target Start/End: Complemental strand, 12898358 - 12898139
Alignment:
Q  82 taatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctc 181  Q
    |||||||||| ||  ||||||||  ||||||||||||||||| ||||| ||||||| || | | ||||||||||||||| |||||||   | ||||||||    
T  12898358 taatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttggggctttg--tgttgtgctc 12898261  T
Q  182 ttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggag 280  Q
    ||| | ||| ||||||||||||||||||  || |||||| || || ||| || ||||||||||||| | ||||||||||||||||||||||||||  |||    
T  12898260 tttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagag 12898162  T
Q  281 ttttattttgagggtgttctttg 303  Q
    |||||||||||||||||||||||    
T  12898161 ttttattttgagggtgttctttg 12898139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 303
Target Start/End: Complemental strand, 41893469 - 41893266
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcgga 196  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||   | ||||||||||||||||| |  ||    
T  41893469 gtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagttg-tttttgggctttg--tgttgtgctcttttggtggttaaga 41893373  T
Q  197 ggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggt 295  Q
    |||||| ||||||  || ||||||||| || |||  | |||| |||||||| | |||||||||||||||||||| ||||| |||||| |||||| |||||    
T  41893372 ggtcgcaaggtttgtgatagctgcatgatccttctat-aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagggt 41893274  T
Q  296 gttctttg 303  Q
    ||||||||    
T  41893273 gttctttg 41893266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 16457559 - 16457364
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| ||||||||||||||||| |||||  || |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  16457559 cgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggct 16457461  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttggg 264  Q
    ||   | ||||||||||| ||||| ||||| |||| ||||||| ||  ||||||||| || |   || |||||||||| || | |||||||||||||||    
T  16457460 tt--gtgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctcagcttggg 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 38577840 - 38577652
Alignment:
Q  116 tttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaag 215  Q
    |||||||| ||||||||||| | |||||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||| || ||||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttggacttttgtttt-gtgctctttcggtggatcagaggtcgagagtttgtggaag 38577742  T
Q  216 ctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtct-aggagttttattttgagg-gtgttctttgg 304  Q
    |||||||||||||| ||  || ||| ||||| |  |||| || |||||||||||  ||||  |||||||||||||| || |||||||||||    
T  38577741 ctgcatgttcattcggtttggagcttttcga-atatggcgcaacttgggtgttgaagtctggggagttttattttgtggagtgttctttgg 38577652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 10248680 - 10248504
Alignment:
Q  40 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||| ||||||||||  ||||||   ||| |||||||| ||||||| || ||||  | |||||| |||||||||||||||||||||||||||||||     
T  10248680 atttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcag 10248581  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctg 218  Q
    ||||||| |||||||| | ||||  ||||   | | ||   ||||||||||||||||||| ||||||||  |||||||||    
T  10248580 ttctttggctcaagtttggttttttgctt---tatatggtttcttttggtggatcggaggccgcgaggtggtggaagctg 10248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 32945767 - 32945700
Alignment:
Q  102 gtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||    
T  32945767 gtgggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggctttt 32945700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 17657128 - 17656999
Alignment:
Q  40 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    ||||||| |||||||| |  ||||||  ||| |||| ||| |||| ||||  |||| || ||||||| |||||||||||||||| ||||||||||||| |    
T  17657128 atttggtgtttctctgatgtaccgggatgaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagt 17657029  T
Q  140 tctttgactcaagttggtttttgggctttt 169  Q
    |||||| |||||||| | |||||| |||||    
T  17657028 tctttggctcaagtttggttttggactttt 17656999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 15906698 - 15906767
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||  ||||||| | |||||||||    
T  15906698 gtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 35816238 - 35816181
Alignment:
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattc 229  Q
    |||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  35816238 ttttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgttcattc 35816181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 30236197 - 30236125
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||  ||||||| | ||||||||||||    
T  30236197 gtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctttt 30236125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 22773598 - 22773699
Alignment:
Q  186 ggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttt 284  Q
    ||||||| ||||||| ||||||||  || | || |||| || ||| || ||||||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  22773598 ggtggattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagtttt 22773697  T
Q  285 at 286  Q
    ||    
T  22773698 at 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 10552267 - 10552325
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattct 142  Q
    ||||||| || | |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  10552267 atttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttct 10552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 12198138 - 12198066
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||| |||||||||||| ||| || || |||||||| ||||||| |||||||| | ||||| ||||||    
T  12198138 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagctttt 12198066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 12442566 - 12442494
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||| |||||||||||| ||| || || |||||||| ||||||| |||||||| | ||||| ||||||    
T  12442566 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagctttt 12442494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 33967338 - 33967389
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgact 148  Q
    ||||||||||||||||||||||||||| ||||| |||| ||| | |||||||    
T  33967338 gtctggtgggccgatcacttttgattcgagatcaggagccaactttttgact 33967389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 40531244 - 40531281
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggag 134  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  40531244 gtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 41920407 - 41920674
Alignment:
Q  40 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    ||||||||||||||||||  || ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |    
T  41920407 atttggtttttctctggtgtactggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagt 41920506  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgtt-----cattcagtc 233  Q
    ||||||||||||||||| |||||||||||   | ||||||||||| |||||||||||||||||||||||| ||  ||||||||| |     | ||||||     
T  41920507 tctttgactcaagttggattttgggcttt--gtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagtt 41920604  T
Q  234 aggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||||||   | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  41920605 aggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagttttattttgagggtgttttttg 41920674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 5389548 - 5389287
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||| ||||||||||||  ||||||  |||| |||| || |||||||||||||||  |||||  |||||||||||||||||||| |||||||||||||     
T  5389548 atttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcag 5389449  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||| |||||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  |||| |||| || ||| || | ||    
T  5389448 ttctttgactcaagtttgtttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagt 5389351  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctt 301  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5389350 gctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctt 5389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 303
Target Start/End: Complemental strand, 24450056 - 24449794
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    |||||||||||||||||  ||||||  |||| |||| ||||||| ||||||||||  || |||||||||||||||||||||||  ||||||| ||||| |    
T  24450056 tttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagt 24449957  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtg 238  Q
    |||||| || ||||||||||||||| |||   | ||||||||||||||||||||||||||||||||||||  || || |||||| || ||| || |||||    
T  24449956 tctttgtcttaagttggtttttgggatttg--tgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtg 24449859  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24449858 ctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttg 24449794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 31585887 - 31585623
Alignment:
Q  40 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  || | ||  ||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  31585887 atttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 31585788  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | ||||||| ||| ||||| |||||||||||||||||| ||  ||||| ||| || ||  || ||||    
T  31585787 ttctttgactcaagttggtttttgggcttt--gtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggt 31585690  T
Q  238 gctcttcgataggtggctcagcttgggtgtt-ggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||| |||||||||||| |||||||  ||||||||||||||||||||||||||    
T  31585689 gctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttattttgagggtgttctttg 31585623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 46692946 - 46692683
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||| ||||||||||||  ||||||  ||||||||| ||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||||||| |     
T  46692946 atttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttag 46692847  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  ||||||||  || | | || | ||    
T  46692846 ttctttggctcaagttggtttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagt 46692749  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  46692748 gctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtgttctttg 46692683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 303
Target Start/End: Original strand, 5459153 - 5459378
Alignment:
Q  77 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttg 176  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||   | |||    
T  5459153 cctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttgatttttgggcttt--gtgttg 5459250  T
Q  177 tgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtct 275  Q
    ||||||||  |||| |||||||| ||||||||| ||  ||||||||| || |||||| |||||||||| || | ||||||||||||||||||||||||||    
T  5459251 tgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtct 5459350  T
Q  276 aggagttttattttgagggtgttctttg 303  Q
     | ||||||||||||| |||||||||||    
T  5459351 ggaagttttattttgatggtgttctttg 5459378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 275
Target Start/End: Complemental strand, 24684598 - 24684370
Alignment:
Q  47 ttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||||||  ||||||  |||| |||| ||| |||||||| | |||| |||||||||||||||||||||| |||| |||||||  |||| |||||||    
T  24684598 ttttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttg 24684499  T
Q  146 actcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcg 245  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||| || ||| |||||||||||||||    
T  24684498 actctagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcggtcaggtgctcttcg 24684400  T
Q  246 ataggtggctcagcttgggtgttggggtct 275  Q
    | | |||||||| ||||| ||| |||||||    
T  24684399 aaatgtggctcaacttggatgtcggggtct 24684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 67 - 294
Target Start/End: Original strand, 7857635 - 7857860
Alignment:
Q  67 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    |||| |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||  || |||||||||||||| ||    
T  7857635 cgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgctgaagttggtttttggcct 7857734  T
Q  167 tttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtg 266  Q
    |||| ||||||||||||| |||||||||| ||||| |||||| |||||||||| ||| ||||| || ||| ||| || || | ||||||||| |||||||    
T  7857735 tttg-ttttgtgctctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagct-tttgaaatgtggctcagtttgggtg 7857832  T
Q  267 ttggggtctaggagttttattttgaggg 294  Q
    |||  |||| ||||||||||||||||||    
T  7857833 ttgaagtctgggagttttattttgaggg 7857860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 271
Target Start/End: Complemental strand, 30686031 - 30685800
Alignment:
Q  40 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||  |||||||||||||     
T  30686031 atttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcag 30685932  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||||| |||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  ||||||||| || ||  || ||||    
T  30685931 ttctttgactcaagttggcttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggt 30685834  T
Q  238 gctcttcgataggtggctcagcttgggtgttggg 271  Q
    |||| | |||| ||||||||||||||||||||||    
T  30685833 gctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 72 - 294
Target Start/End: Complemental strand, 27031934 - 27031714
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||| ||||||| |||| |||| |||||||||||||||||||||| |||||| ||||||  |||||| |||||||||||||| ||| |||||     
T  27031934 ggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggctcaagttggttttagggattttg- 27031836  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||| || | | ||| ||||| | ||||||||| |||| |||||      
T  27031835 ttttgtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcga-atgtggctcagtttggatgttgaa 27031737  T
Q  272 gtctaggagttttattttgaggg 294  Q
    |||| ||||||||||||||||||    
T  27031736 gtctgggagttttattttgaggg 27031714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 294
Target Start/End: Original strand, 24658916 - 24659135
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||| ||||||| |||| |||||||||||| |||||||||||||| |||||||||||||  |||||| || |||||||||||||||| ||||     
T  24658916 ggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggc-tttgg 24659014  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||  ||||||||||| || ||  ||| ||||| | |||||||||| |||| |||       
T  24659015 ttttgtgctctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcga-atgtggctcagcctgggagtt-aa 24659112  T
Q  272 gtctaggagttttattttgaggg 294  Q
    |||| ||||||||||||||||||    
T  24659113 gtctgggagttttattttgaggg 24659135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 294
Target Start/End: Complemental strand, 46814561 - 46814341
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgt 171  Q
    |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  | |||| ||||||||||||||| ||||||||     
T  46814561 ggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggcttttg- 46814463  T
Q  172 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 271  Q
    ||||||||||||| ||||||||||| |||| ||||||   ||||||||| ||||||||  | ||| ||| ||||| | ||||||| || |||||||||      
T  46814462 ttttgtgctctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcga-atgtggctcggcgtgggtgttgaa 46814364  T
Q  272 gtctaggagttttattttgaggg 294  Q
    || | |||||||||||| |||||    
T  46814363 gtatgggagttttatttcgaggg 46814341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 20113647 - 20113523
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    ||||||||||||| |||  ||||||  |||| |||| ||||||||||||||| ||  ||||| |||| |||||| ||||||||||||||||||| ||| |    
T  20113647 tttggtttttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagt 20113548  T
Q  140 tctttgactcaagttggtttttggg 164  Q
    ||||| ||| |||||||||||||||    
T  20113547 tctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 19598648 - 19598720
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||||||||| |||||||||| |||||| |||||| |||||||||||||||| | ||||||| ||||    
T  19598648 gtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttgggttttt 19598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 6583298 - 6583237
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 27102210 - 27102275
Alignment:
Q  104 gggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||||||||||||| ||||||||||||| |||||||  ||||||| | ||||||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggctttt 27102275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 32864643 - 32864558
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| | |||||||||| ||||||||| |||| ||||||| ||||  |||||||||||||||| | ||||||||||||    
T  32864643 atttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggctttt 32864558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 17033585 - 17033655
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||| |||  |||||||||||||||||||||||| || ||||||||||||| |||||||  |||||||    
T  17033585 atttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 6764334 - 6764245
Alignment:
Q  214 agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| || ||| || ||||||||||||| | |||||||| ||||| |  |||||||| ||||||||||||| ||| |||||||||    
T  6764334 agctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcaggatgttctttg 6764245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 9313371 - 9313310
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    ||||||| |||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||    
T  9313371 atttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 38544807 - 38544759
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  38544807 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 34774870 - 34774955
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca-attctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||||||||||||| |||||||||||||| || |||||||||||||  || |||| ||||||||   ||||||||||||    
T  34774870 atttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtttttttggctcaagtttagttttgggctttt 34774955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15840981 - 15840924
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||  |||| |||||||    
T  15840981 gtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 22200020 - 22200069
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttga 146  Q
    ||||| ||| |||||||||||||||||||||||| |||||||| ||||||    
T  22200020 gtctgatggaccgatcacttttgattcaagatcgagagtcaatgctttga 22200069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 2877652 - 2877711
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 160  Q
    ||||||||||||| | ||||||||||||| ||||| | | |||||||||||||||||||||    
T  2877652 tggtgggccgatcgcatttgattcaagattgggag-ccagtctttgactcaagttggtttt 2877711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 4651792 - 4651832
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  4651792 gtctggggggccgatcacttttgattcgagatcgggagtca 4651832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 22239699 - 22239738
Alignment:
Q  107 ccgatcacttttgattcaagatcgggagtcaattctttga 146  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  22239699 ccgatcacttttgattcaagatcgagagtcaatgctttga 22239738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 16147570 - 16147639
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| | ||||||||||| ||||||||||| |||||||  ||||||| | |||||| |||||    
T  16147570 tggtgggacgatgaattttgattcaatatcgggagtcagttctttgggtcaagtttgattttggactttt 16147639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 10785524 - 10785456
Alignment:
Q  101 ggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||| | | ||||| ||| ||||||||||||| || |||| |||||||| | ||||||||||||    
T  10785524 ggtgggccggttaattttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggctttt 10785456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 30655572 - 30655612
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  30655572 gtctagtgggccgatcgcttttgattcgagatcgggagtca 30655612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 303
Target Start/End: Original strand, 34378090 - 34378315
Alignment:
Q  77 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttg 176  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||   |||||    
T  34378090 cctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggcttt--gttttg 34378187  T
Q  177 tgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtct 275  Q
    |||||||| |||||| ||||||||||||||||| ||  || ||  || || ||| || || |||||||||  | |||||||||||||||||||||||| |    
T  34378188 tgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctcagcttgggtgttggggttt 34378287  T
Q  276 aggagttttattttgagggtgttctttg 303  Q
      ||||||||||||||||||||||||||    
T  34378288 gagagttttattttgagggtgttctttg 34378315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 698315 - 698578
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||  ||||||  |||| |||| |||||||||||||| |||  ||||||||| |||||| |||||||||| ||||||||||||||    
T  698315 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaa 698414  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
     |||||||||||||||||||||||||||||   | |||| ||||||  |||| || ||||| ||||||||| ||  ||||||||  || ||| || ||||    
T  698415 ctctttgactcaagttggtttttgggcttt--gtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggt 698512  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    |||||| || | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  698513 gctctttgaaatgtggctcagcttgggtgttggggtctgagagttttatttggagggtgttctttg 698578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 295
Target Start/End: Original strand, 29087474 - 29087689
Alignment:
Q  78 ctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgt 177  Q
    |||||| |||||| |||| ||||||||| | |||| |||||||||| ||||| ||||||| |||||||| |||| ||||||| |||||||||| ||||||    
T  29087474 ctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggcttttg-ttttgt 29087572  T
Q  178 gctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctag 277  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||| || ||  ||||||||||||||| || |||||||| ||| | ||||||||||| |    
T  29087573 gctctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcg-tatgtggctcaacttagatgttggggtctgg 29087671  T
Q  278 gagttttattttgagggt 295  Q
    ||| ||||||||||||||    
T  29087672 gagctttattttgagggt 29087689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 18593197 - 18593460
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||| ||  ||||||  |||| | || |||||||||||||| |||  || | |||||| ||||||||||||||| ||||||||||| |     
T  18593197 atttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttag 18593296  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 237  Q
    |||||||||||||||||||||||||||||    | ||||||||||| ||||| |||||||||||||| |||  || || |||||| || ||| || ||||    
T  18593297 ttctttgactcaagttggtttttgggcttag--tgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggt 18593394  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    | ||||||| | |||||||| ||||||||||||||||| |||||||||||| |||| |||||||||    
T  18593395 gttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttggaggatgttctttg 18593460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 7161973 - 7161874
Alignment:
Q  210 tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttggtggtg 309  Q
    ||||||||||||| || ||  |||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||    
T  7161973 tggaagctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtg 7161874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 7162353 - 7162267
Alignment:
Q  130 gggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagct 217  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||    
T  7162353 gggagtcagttctttgactcaagttggtttttgggtttttg-ttttgtgctctttcgatggatcggaggtcgcgaggttatggaagct 7162267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 13954316 - 13954231
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||| | ||||||||||||    
T  13954316 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggctttt 13954231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 7195308 - 7195236
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||| |  |||||||||||    
T  7195308 gtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagttagagtttgggctttt 7195236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 7392113 - 7392052
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  7392113 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 22675398 - 22675322
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttt 168  Q
    |||| ||||||||| ||||||  ||||||||| ||||||||||||| ||||||| |||||||| | |||||||||||    
T  22675398 ctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggcttt 22675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 14302511 - 14302377
Alignment:
Q  85 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttt 184  Q
    |||||| |||| ||||||||| | ||||||||||| ||| |||| |||||||| |||||||   |||||| | ||||||||||   ||| ||   |||||    
T  14302511 tttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttggttttgggctt---tttatggtttcttt 14302415  T
Q  185 tggtggatcggaggtcgcgaggttttggaagctgcatg 222  Q
     |||||||||||||||| |||||  |||||||||||||    
T  14302414 cggtggatcggaggtcgagaggtggtggaagctgcatg 14302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 21402903 - 21402834
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||||||||||||||||  ||| ||||||||||||| |||||||||||| ||| | ||||| ||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactcaggtttggttttgagctttt 21402834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 33258976 - 33258903
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||| ||  |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  33258976 ggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 27713081 - 27713153
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||| |||||||||||  ||||||||| ||||||||| ||| ||||||| |||||||| | ||||||||||||    
T  27713081 gtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggctttt 27713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 39184256 - 39184208
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 25992007 - 25992091
Alignment:
Q  85 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||| |||| |||||||||||| ||| |||||||||| |||||| |||||| ||||||  ||| || | | ||||||||||||    
T  25992007 tttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggctttt 25992091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 26046045 - 26045961
Alignment:
Q  85 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||||| |||| ||||||||  ||||||||||||||||| ||||||||||| | |  |||| |||||||| | |||||| |||||    
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttggactttt 26045961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 8297498 - 8297552
Alignment:
Q  115 ttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||||| ||||||||||||| ||||||| |||||||| | |||||| |||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttt 8297552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 12046270 - 12046303
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcggga 133  Q
    |||||||||||||||||||||||| |||||||||    
T  12046270 tggtgggccgatcacttttgattcgagatcggga 12046303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 23426356 - 23426425
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggct 166  Q
    ||||||||| |||| |||||||||||| |||| |||||||| ||||| || |||| || | |||||||||    
T  23426356 gtctggtggaccgaacacttttgattcgagattgggagtcagttcttcgaatcaattttggttttgggct 23426425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 18313636 - 18313544
Alignment:
Q  174 ttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggt 265  Q
    |||| |||||| ||||||| | ||||||||||||||  || ||||||||| ||||||  | ||||||||||||| | |||||| || ||||||    
T  18313636 ttgtactctttcggtggattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggt 18313544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 40 - 303
Target Start/End: Original strand, 3117447 - 3117710
Alignment:
Q  40 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 138  Q
    ||||||||||||||||||   |||||  |||| |||| |||||||||||| |  ||  || ||||||||||||||||||||||||||||||||||||||     
T  3117447 atttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcag 3117546  T
Q  139 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 237  Q
    ||||||||||||||||||||||||||||||   | |||||||||||  |||| |||||||||||||||||| ||  || |||||| || |||  | | ||    
T  3117547 ttctttgactcaagttggtttttgggcttt--gtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgt 3117644  T
Q  238 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||| | |||||||| ||||||||||||||||| ||||||||||||  |||||||||||||    
T  3117645 gctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttatagggtgttctttg 3117710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 16510425 - 16510304
Alignment:
Q  43 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 141  Q
    |||||||||||||||  |||| || | || |||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||| | |||||| |||    
T  16510425 tggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttc 16510326  T
Q  142 tttgactcaagttggtttttgg 163  Q
    ||| ||||||||||||||||||    
T  16510325 ttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 10541980 - 10542049
Alignment:
Q  234 aggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||| |||||||    
T  10541980 aggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttg 10542049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 32935421 - 32935336
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| || | |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||| | |||||| |||||    
T  32935421 atttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttggactttt 32935336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 20701870 - 20701754
Alignment:
Q  99 ctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggagg 198  Q
    |||||| |||||||||||||||||| ||||||||||| | ||||||| || ||||| | ||||||||||   ||| ||   ||||| |||||||||||||    
T  20701870 ctggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttttgggctt---tttatggtttctttcggtggatcggagg 20701774  T
Q  199 tcgcgaggttttggaagctg 218  Q
    ||| |||||  |||||||||    
T  20701773 tcgagaggtagtggaagctg 20701754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 26216088 - 26215970
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcgga 196  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| |  |||  || | ||||||||||   |||| ||| |||||||||||| ||||    
T  26216088 gtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggctt---ttttggtgttcttttggtggaccgga 26215992  T
Q  197 ggtcgcgaggttttggaagctg 218  Q
    | | ||| |||  |||||||||    
T  26215991 gattgcgcggtggtggaagctg 26215970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 26534815 - 26534742
Alignment:
Q  70 gaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctt 143  Q
    |||||| ||| || ||||||| || | ||||||||||||||||||||||||||| |||| |||||||| |||||    
T  26534815 gaggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 9224042 - 9224101
Alignment:
Q  86 ttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    ||||| |||| ||||||||||| |||| |||||||||| ||||||||||||| |||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 14663231 - 14663294
Alignment:
Q  240 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
    ||||||| | ||||||| |||||| ||||||||| | ||||||||||||||||| |||||||||    
T  14663231 tcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttg 14663294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 34105428 - 34105479
Alignment:
Q  100 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 151  Q
    |||||||||||||||||||||||| ||||||||||||| ||  |||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 34092807 - 34092864
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||| |||||||||||||||||| |||| || |||| ||||||||| |||||||    
T  34092807 gtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtt 34092864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 3880710 - 3880626
Alignment:
Q  40 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattc 123  Q
    ||||||| ||||||||||  |||| ||  |||||||| ||| || ||||||| |||| || ||||||||||||||||||||||||    
T  3880710 atttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattc 3880626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 21266112 - 21266196
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttt 168  Q
    ||||||| |||| | |||||||||||||| |||||||||| ||||||||||| | || | ||  ||||||| | |||||||||||    
T  21266112 atttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggcttt 21266196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 13423482 - 13423549
Alignment:
Q  101 ggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcttt 168  Q
    ||||| ||||||||||||||||| |||||| |||||  ||||||| |||||||| | || ||||||||    
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggcttt 13423549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 12794101 - 12794173
Alignment:
Q  72 ggtgtcctgctaatttggtactaacgtctggtgggccgatca-cttttgattcaagatcgggagtcaattctt 143  Q
    |||||||| ||  |||||| |||| |||| |||||||||||| |||||||||| ||||| ||||||| |||||    
T  12794101 ggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 34090375 - 34090415
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtca 137  Q
    |||||||||| |||||| ||||||||| |||||||||||||    
T  34090375 gtctggtgggtcgatcaattttgattcgagatcgggagtca 34090415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 35897 - 35655
Alignment:
Q  41 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 139  Q
    |||||||||||||||||  ||||||  |||| |||| |  |||||||||||  ||  |||| |||||||||||||||||||||| |||||||||||| ||    
T  35897 tttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtc-at 35799  T
Q  140 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtg 238  Q
    ||||||||| |||||||||||||||||||   | ||||||||||| ||||||||||||||| |||| ||| ||  ||||||||| ||  || || |||||    
T  35798 tctttgacttaagttggtttttgggcttt--atgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtg 35701  T
Q  239 ctcttcgataggtggctcagcttgggtgttggggtctaggagtttt 284  Q
    |||||||| | | |||||||||||||||||||||| | ||||||||    
T  35700 ctcttcgaaatgaggctcagcttgggtgttggggtgtgggagtttt 35655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 5747 - 5923
Alignment:
Q  127 atcgggagtcaattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttc 225  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||  || |||| | || ||    
T  5747 atcgggagtcagttctttgactcaggttggtttttgggcttt-gtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatc 5845  T
Q  226 attcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttg 303  Q
     ||| || ||||||||||||  | |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  5846 cttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttgagggtgttttttg 5923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 19382 - 19467
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | ||||||||||||    
T  19382 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggctttt 19467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 42212 - 42135
Alignment:
Q  92 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | ||||||| ||||    
T  42212 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggatttt 42135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 58126 - 58211
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggctttt 169  Q
    ||||||| |||| || |||||||||||||||||||||||||||||||| |||||||| ||||  ||||||| | |||| |||||||    
T  58126 atttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtttggttttaggctttt 58211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 36706 - 36773
Alignment:
Q  84 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 151  Q
    ||||||| |||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||| |||||    
T  36706 atttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 1086 - 1038
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 145  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  1086 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 3842 - 3896
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 151  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||  |||||||||    
T  3842 gtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 8141 - 8198
Alignment:
Q  97 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 154  Q
    |||||||| |||||||||||||||||| |||| || |||| ||||||||| |||||||    
T  8141 gtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtt 8198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University