View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5163-Insertion-1 (Length: 379)
Name: NF5163-Insertion-1
Description: NF5163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5163-Insertion-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 46727 - 46366
Alignment:
| Q |
8 |
actgacacgtgtccgacaccggaacacctaaatgttttatattatatacataccagcagccattttagaagcaacaccagcaaagacaaagagaaaggtg |
107 |
Q |
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| T |
46727 |
actgacacgtgtccaacaccgggacacctaaatgttttatattatatacataccagcagccattttagaagcaacaccagcaaagacaaagagaaaggtg |
46628 |
T |
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| Q |
108 |
acaatgaattcaacaattagagcctggatgcaattaggttgagcagcctcttgggttgttcctaaagtgattttggccatattgtcttatgatttgcgat |
207 |
Q |
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| T |
46627 |
acaataaattcaacaattagagcctggatgcaattaggttgagcagcctcttgggttgttcctaaagtgattttggccatattgtcttatgatttgcgat |
46528 |
T |
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| Q |
208 |
gtgcaattaattgcttcttacactcaagaaaaatgatcaaagaagctgccaatttataaagacaataaacaacaataaacatcaatttatataccaaaaa |
307 |
Q |
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| T |
46527 |
gtgcaattaattgcttcttacactcaagaaaaatgatcaaagaagctgtcaatttataaagacaata----------aacatcaatttatataccaaaaa |
46438 |
T |
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| Q |
308 |
ataatttgatgttaattgaggcggcatctgaagtattttatattattttaataaattttacctaaacaataa |
379 |
Q |
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| T |
46437 |
ataatttgatgttaattgaggcggcatctgaagtattttatattattttaataaattttacctaaacaataa |
46366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 44639 - 44422
Alignment:
| Q |
50 |
tatatacataccagcagccattttagaagcaacaccagcaaagacaaagagaaaggtgacaatgaattcaacaattagagcctggatgcaattaggttga |
149 |
Q |
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| T |
44639 |
tatatatataccagcagtcattgcagaaccaacaccagcaaagacaaagagaaaggtggcaatgaattcaacaattagagcctgaatgcaatctggttga |
44540 |
T |
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| Q |
150 |
gcagcctcttgggttgttcctaaagtgattttggccatattgtcttatgatttgcgatgtgcaattaattgcttcttacactca-----agaaaaatgat |
244 |
Q |
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| T |
44539 |
gtagcctctcgggttgttcctaacgcaattttggcca---tggtttctgatttgcaatgtgtgatgaattgcttctcacactcagtggttaaaaaatgaa |
44443 |
T |
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| Q |
245 |
caaagaagctgccaatttata |
265 |
Q |
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| T |
44442 |
caaagaagctgccaatttata |
44422 |
T |
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