View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5163_high_2 (Length: 357)
Name: NF5163_high_2
Description: NF5163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5163_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 38677263 - 38677611
Alignment:
| Q |
1 |
aatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagttattgactaaattgaataatttttcaaattttttgaata |
100 |
Q |
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| T |
38677263 |
aatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagttattgactaaattgaataatttttcaaattttttgaata |
38677362 |
T |
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| Q |
101 |
atcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc |
200 |
Q |
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| T |
38677363 |
atcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc |
38677462 |
T |
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| Q |
201 |
aattcgtttacaatacccccaaaattgaagtgaacaatagcggcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaa |
300 |
Q |
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| T |
38677463 |
--ttcatttacaatacccccaaaattgaagtgaacaatagccgcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaa |
38677560 |
T |
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| Q |
301 |
gaaatatataataatccgattaagagaaaatcaaagtgttttagaataatg |
351 |
Q |
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| T |
38677561 |
gaaatatataataatccgattaagagaaaatcaaagtgttttagaataatg |
38677611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 38673466 - 38673509
Alignment:
| Q |
40 |
tcttccagccctgatacaaagttattgactaaattgaataattt |
83 |
Q |
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| T |
38673466 |
tcttccagcccagatacaaagttattgactacaatgaataattt |
38673509 |
T |
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