View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5164-Insertion-1 (Length: 997)
Name: NF5164-Insertion-1
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-1 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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Alignment Details
Target: scaffold0079 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 8 - 956
Target Start/End: Original strand, 5643 - 6597
Alignment:
| Q |
8 |
actatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaacataaatattagnnnnnnnncacaaatatagggatttaatatgttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5643 |
actatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaacataaatattagaaaaaaaacacaaatatagggatttaatatgttgaa |
5742 |
T |
|
| Q |
108 |
actgacaatccagagcaagcacaagcagcacttttcctggcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatcta--gggttggt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5743 |
actgacaatccagagcaagcacaagcagcagttctcctagcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatctatagggttggt |
5842 |
T |
|
| Q |
206 |
atcgattaccaggaatctttaacaatttcacatcattcttctctaaaaaagattattatgacaatttcccatccgtgttttctaaaaatgacgtcaacaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
5843 |
atcgattaccaggaatctttaacaatttcacatcagtcttctctaaaaaagattattacgacaatttcgcatcagtgttttctaaaaatgacgtcaacaa |
5942 |
T |
|
| Q |
306 |
gaatcctaaacaaagacaatacagttttcaggcaacataagttacacataacataacccaccaacacacatgactcaaaactataatcaaaagtacttta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
5943 |
gaatcctaaacaaagacaatacagttttcaggcaacataagttacgcataacataacccaccaacacacatgattcaaaactataatcaaaaggacttta |
6042 |
T |
|
| Q |
406 |
aaaactgcttctgcattaaaaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcctctgggagcttaccaacgtg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6043 |
aaaactgcttctgcattaaaaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcccctgggagcttaccaacgtg |
6142 |
T |
|
| Q |
506 |
gaaacatttcttccacctttcttcatactctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttttga |
605 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6143 |
aaaacatttctcccacctttcttcatactctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttgtga |
6242 |
T |
|
| Q |
606 |
atatcaaaatcattgatgtaaggccacaaactttgttaagatgtccnnnnnnnncttgcctcatcattgtcgctgaggtcatcaagacaatcattgtcat |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6243 |
atatcaaaatcattgatgtaaggccacaaactttgttgagatgtccaaaaaaaacttgcctcatcattgtcgctgaggtcatcaagacagtcattgtcat |
6342 |
T |
|
| Q |
706 |
ctaggttatcaaaagaaaaatagtctggccattcctcataagtactcatatcaacattatggcagtggcgaccccaaggataaacccaagaaacttcgga |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6343 |
ctaggttatcaaaagaaaaatagtctggccattccttataagtactcatatcaacattatggcagtggcgaccccaaggacaaacccaagaaacttcgga |
6442 |
T |
|
| Q |
806 |
ttctaagttccctacttctgacttagcaacttcttctatttcatcttttgaatggggcttcgtagctacctctg-ttatttattgttttgatc-aataag |
903 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
6443 |
ttctaagttctctacttctgacttagcaacttcttctatttcgtcttttgaatggggcttcgtagctacctctgtttatttattgttttgatcaaataag |
6542 |
T |
|
| Q |
904 |
-aacccaggcgtgagggagaatatttaaatatggctg-aagttaaaaaggaaaag |
956 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||| ||||||||||| ||||| |
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|
| T |
6543 |
aaacccaagggtgagggaggatatttaaatatggctgaaagttaaaaagaaaaag |
6597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 8 - 960
Target Start/End: Original strand, 3100 - 4039
Alignment:
| Q |
8 |
actatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaacataaatattagnnnnnnnncacaaatatagggatttaatatgttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||| ||||||||||||||||||| |
|
|
| T |
3100 |
actatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaaaaaaca--------------cacaaatacagggatttaatatgttgaa |
3185 |
T |
|
| Q |
108 |
actgacaatccagagcaagcacaagcagcacttttcctggcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatctagggttggtat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3186 |
actgacaatccagaacaagcacaagcagcacttctcctggggatgggtaataagagcaagacaatagtgcttatgacattagaaaatctagggttggtat |
3285 |
T |
|
| Q |
208 |
cgattaccaggaatctttaacaatttcacatcattcttctctaaaaaagattattatgacaatttcccatccgtgttttctaaaaatgacgtcaacaaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
3286 |
cgattaccaggaatctttaacaatttcacatcagtcttctctaaaaaagattattatgacaatttcgcatcagtgttttctaaaaatgacgtcaacaaga |
3385 |
T |
|
| Q |
308 |
atcctaaacaaagacaatacagttttcaggcaacataagttacacataacataacccaccaacacacatgactcaaaactataatcaaaagtactttaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
3386 |
atcctaaacaaagacaatacagttttcaggcaacataagttacacataacataacccaccaacacacatgattcaaaactataataaaaagtactttaaa |
3485 |
T |
|
| Q |
408 |
aactgcttctgcattaaaaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcctctgggagcttaccaacgtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
3486 |
aactgcttctgcattaaaaactgcttctctatctcttg--ctgagtcctcattctttttcccatgtcttcacttttcccctgggagcttacccacgtgaa |
3583 |
T |
|
| Q |
508 |
aacatttcttccacctttcttcatactctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttttgaat |
607 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3584 |
aacatttctcccacctttctttatactctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttgtgaat |
3683 |
T |
|
| Q |
608 |
atcaaaatcattgatgtaaggccacaaactttgttaagatgtccnnnnnnnncttgcctcatcattgtcgctgaggtcatcaagacaatcattgtcatct |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3684 |
atcaaaatcattgatgtaaggccacaaactttgttgagatgtcc-aaaaaaacttgcctcatcattgtcgctgaggtcatcaagacaatcattgtcgtct |
3782 |
T |
|
| Q |
708 |
aggttatcaaaagaaaaatagtctggccattcctcataagtactcatatcaacattatggcagtggcgaccccaaggataaacccaagaaacttcggatt |
807 |
Q |
| |
|
|| |||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3783 |
gggctatcaaaacaataatagtccggccattccacataagtactcatatcaacattatggcagtggcgaccccaaggacaaacccaagaaacttcggatt |
3882 |
T |
|
| Q |
808 |
ctaagttccctacttctgacttagcaacttcttctatttcatcttttgaatggggcttcgtagctacctctg-ttatttattgttttgatc-aataag-a |
904 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
3883 |
ctaagttctctacttctgacttagcaacttcttctatttcgtcttttgaacggggcttcgtagctacctctgtttatttattgttttgatcaaataagaa |
3982 |
T |
|
| Q |
905 |
acccaggcgtgagggagaatatttaaatatggctg-aagttaaaaaggaaaaggaca |
960 |
Q |
| |
|
||||| | ||||||||| ||||||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
3983 |
acccaagggtgagggaggatatttaaatatggctgaaagttaaaaaagaaaaagaca |
4039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 5e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 326 - 651
Target Start/End: Complemental strand, 41075692 - 41075383
Alignment:
| Q |
326 |
acagttttcaggcaacataagttacacataacataa-cccaccaacacacatgactcaaaactataatcaaaagtactttaaaaactgcttctgcattaa |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
41075692 |
acagttttcaggcaacataagttacacataacaaaaacccaccaacacacatgattcaaaactataatcaaaactactttaaaaaatgctt--------- |
41075602 |
T |
|
| Q |
425 |
aaactgcttctctatctcttgctctgagtcctcattctttttcccatgtcttcacttttcctctgggagcttaccaacgtggaaacatttcttccacctt |
524 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
41075601 |
---------ctctttctcttactctcagtcctcattctttttcccatgtctttaatcttcccctgggagcttaccaacgtgaaaacatttatcccacctt |
41075511 |
T |
|
| Q |
525 |
tcttcata-ctctgcatccttctgcaggtttagagattgatgataaagaattcatatatgcacatagaaactaaatttttgaatatcaaaatcattgatg |
623 |
Q |
| |
|
|| ||||| | | || | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
41075510 |
tcgtcataacaataactcatcctgcaggtttagtgattgataataaagaattcatatatgcacatagaaactaaatttgtgaatatcaaaatcattgctg |
41075411 |
T |
|
| Q |
624 |
taaggccacaaactttgttaagatgtcc |
651 |
Q |
| |
|
|||||||||| ||||||| |||||||| |
|
|
| T |
41075410 |
taaggccacatgctttgttgagatgtcc |
41075383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 817 - 899
Target Start/End: Complemental strand, 41075220 - 41075137
Alignment:
| Q |
817 |
ctacttctgacttagcaacttcttctatttcatcttttgaatggggcttcgtagctacctc-tgttatttattgttttgatcaa |
899 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||| |||||||||||| |
|
|
| T |
41075220 |
ctacttctggctcagcaacttcttctattttgtcttttgaatggggcttcgtcgctacctctttttatttaatgttttgatcaa |
41075137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 46306646 - 46306695
Alignment:
| Q |
342 |
ataagttacacataacataacccaccaacacacatgactcaaaactataa |
391 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| || || |||||| |
|
|
| T |
46306646 |
ataagttacgcataacataacccactaacacacatgattccaacctataa |
46306695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 606
Target Start/End: Complemental strand, 4382976 - 4382918
Alignment:
| Q |
550 |
ggtttagagattgatga--taaagaattcatatatgcacatagaaactaaatttttgaa |
606 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
4382976 |
ggtttagagattgatgtattaaagaattcaaatatgcacatagaaactgaatttgtgaa |
4382918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 587
Target Start/End: Complemental strand, 444784 - 444741
Alignment:
| Q |
544 |
tctgcaggtttagagattgatgataaagaattcatatatgcaca |
587 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
444784 |
tctgcaggtttagagattgatattaaagaattcaaatatgcaca |
444741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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