View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164-Insertion-10 (Length: 190)
Name: NF5164-Insertion-10
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-10 |
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| [»] chr6 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 8e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 800007 - 800189
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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| T |
800007 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
800106 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
800107 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
800189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 8269821 - 8269639
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269821 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
8269722 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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| T |
8269721 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
8269639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 8274536 - 8274354
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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| T |
8274536 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
8274437 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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| T |
8274436 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
8274354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 795252 - 795434
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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| T |
795252 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcactgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
795351 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
795352 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
795434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 19940765 - 19940583
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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| T |
19940765 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
19940666 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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| T |
19940665 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
19940583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 19945519 - 19945337
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19945519 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
19945420 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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| T |
19945419 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
19945337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 6688829 - 6688647
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6688829 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
6688730 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6688729 |
atgagactttgtgtgacaatttgcttcagtaaattgctttggctggttatcccacgtgcatgtgggtccttaaacaatgttca |
6688647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 6693569 - 6693387
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6693569 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
6693470 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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|||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6693469 |
atgagactttgtgtgacaatttgtttcaacaaattgttttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
6693387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 26199539 - 26199358
Alignment:
| Q |
8 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataataaatgc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26199539 |
gtatgaatgtcatgctttcaaacttagcaagctatgcttctgcaccgagctataccataggcttactatttgaaagaaaaatgcaacctataatatatgc |
26199440 |
T |
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| Q |
108 |
atgagactttgtgtaacaatttgcttcagcaaattgctttggctggttatcccacgtgcatgtgggtccttacacaatgttca |
190 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26199439 |
atgagactttgtgtgacaatttgcttcagcaaattgctttggctggttat-ccacgtgcatgtgggtccttacacaatgttca |
26199358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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