View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5164-Insertion-12 (Length: 80)

Name: NF5164-Insertion-12
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5164-Insertion-12
NF5164-Insertion-12
[»] chr1 (2 HSPs)
chr1 (6-80)||(7098907-7098981)
chr1 (6-80)||(7582265-7582339)
[»] chr4 (2 HSPs)
chr4 (7-80)||(13616095-13616168)
chr4 (6-72)||(20297145-20297211)
[»] chr5 (12 HSPs)
chr5 (4-72)||(30206006-30206074)
chr5 (6-78)||(17982410-17982482)
chr5 (6-73)||(30242925-30242992)
chr5 (6-73)||(30435305-30435372)
chr5 (6-73)||(30749126-30749193)
chr5 (6-72)||(17418711-17418777)
chr5 (18-73)||(29871681-29871736)
chr5 (6-73)||(30482887-30482954)
chr5 (7-73)||(30713975-30714041)
chr5 (18-73)||(30339078-30339133)
chr5 (7-74)||(30474865-30474932)
chr5 (6-73)||(30677721-30677788)
[»] chr7 (1 HSPs)
chr7 (6-72)||(26706827-26706893)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 7098907 - 7098981
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaag 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098907 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaag 7098981  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 7582339 - 7582265
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaag 80  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||| |||||    
T  7582339 cataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatttggtaag 7582265  T

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Target: chr4 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 13616095 - 13616168
Alignment:
Q  7 ataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaag 80  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | ||||||||||    
T  13616095 ataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaag 13616168  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 20297211 - 20297145
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 72  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  20297211 cataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacat 20297145  T

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Target: chr5 (Bit Score: 45; Significance: 3e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 30206006 - 30206074
Alignment:
Q  4 aacataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 72  Q
    |||||||||| | |||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||    
T  30206006 aacataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacat 30206074  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 17982410 - 17982482
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgta 78  Q
    |||||||||| ||||||||||||||| || ||||| ||||||| | |||||||||||||||  ||||||||||    
T  17982410 cataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgta 17982482  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 30242992 - 30242925
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||  ||||||||||||||||| ||||| ||  ||| ||||||||||||||| ||||||||    
T  30242992 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacatt 30242925  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 30435305 - 30435372
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||  ||||||||||||||| | ||||| ||  ||| ||||||||||||||||||||||||    
T  30435305 cataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacatt 30435372  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 30749126 - 30749193
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||  ||||||||||||||||| ||||| ||  ||| ||||||||||||||| ||||||||    
T  30749126 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacatt 30749193  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 17418777 - 17418711
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 72  Q
    |||||||| | ||||||||||||||| || || || ||||||| ||||||||||||| |||||||||    
T  17418777 cataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacat 17418711  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29871681 - 29871736
Alignment:
Q  18 aggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||||||||| ||||| ||  ||| ||||||||||||||| ||||||||    
T  29871681 aggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacatt 29871736  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 30482887 - 30482954
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||||||| || ||||||||    
T  30482887 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacatt 30482954  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 30714041 - 30713975
Alignment:
Q  7 ataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    |||||||||  ||||||||||||||||| ||||| ||  ||| ||||||| ||||||| ||||||||    
T  30714041 ataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacatt 30713975  T

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Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 30339133 - 30339078
Alignment:
Q  18 aggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||||||||| ||||| ||  ||| |||||||||||| || ||||||||    
T  30339133 aggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacatt 30339078  T

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Target: chr5; HSP #11
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30474865 - 30474932
Alignment:
Q  7 ataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattt 74  Q
    ||||||| | |||||| ||||||||||| |||||||| | |  ||||||| |||| ||||||||||||    
T  30474865 ataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacattt 30474932  T

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Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 30677788 - 30677721
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacatt 73  Q
    ||||||||||  |||||||||||| |||| || || ||  ||| |||||||||||||||| |||||||    
T  30677788 cataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacatt 30677721  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 26706827 - 26706893
Alignment:
Q  6 cataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacat 72  Q
    |||||||  ||||||| |||||| ||||| ||||||||||||| ||||||||||||||| |||||||    
T  26706827 cataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacat 26706893  T

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