View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164-Insertion-3 (Length: 772)
Name: NF5164-Insertion-3
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 178 - 772
Target Start/End: Complemental strand, 48952775 - 48952176
Alignment:
| Q |
178 |
aaaaaattgtgtgtttactttt-gcaggtgtttgacttatattttcaaaataaaaactact-----gggttgctcaaacaaggcttttttggacattttt |
271 |
Q |
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| T |
48952775 |
aaaaaattgtgtgtttactttttgcaagtgtttgacttatattttcaaaataaaaactacttttatgggttgctcaaacaaggcttttt-ggacattttt |
48952677 |
T |
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| Q |
272 |
gaacatgttagcaaaaccctttccaaaagcaacgtcctatattttacaatttcaaatataatttgaccatttatttactctttacaatttatattgtaaa |
371 |
Q |
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| T |
48952676 |
gaacatgttaggaaaaccctttccaaaagcaacgtcctatagtttacaatttcaaatacaatttgaccatttatttactctttacaatttatattgtaaa |
48952577 |
T |
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| Q |
372 |
aaccgccttagtaacattggatacttgatacaaaaaacctaacgacaggcctgcaacattgtttggatgttgtgttttgtttctttacggttcaaacttt |
471 |
Q |
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| T |
48952576 |
aaccgccttagtaacattggatacttgatacaaaaaacctaacgacaggcctgcaacattgtttggatgttgtgttttgtttctttgcggttcaaacttt |
48952477 |
T |
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| Q |
472 |
tctggttacagttaaacatcctttggcttatctaaactcattctctaatttctaacataaaaaagacccgaatttacatgcaaaagcacaaaggcagtgt |
571 |
Q |
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| T |
48952476 |
tctggttacagttaaacatcctttggcttatctaaactcattctctaatttctaatataaaaaagacctgaatttacatgcaaaagcacaaaggcagtgt |
48952377 |
T |
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| Q |
572 |
ctcagctacaacaatggatagaccactcaaactttacttcattccatacttagcagcagggcacatgatccctctatgtgacatagcttctctctttgct |
671 |
Q |
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| T |
48952376 |
ctcagccacaacaatggataaaccactcaaactttacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgct |
48952277 |
T |
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| Q |
672 |
tcacgtggccactttgttacaatcataaccgctcattcaaatgctaaaatccttcccaaatctaacaacaacttcaacgttcaaacctttcaattccctt |
771 |
Q |
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| T |
48952276 |
tcacgtggtcactttgttacaatcataaccactcattcaaatgctaaaatccttcccaaatctaacaacaacttcaactttcaaacctttcaattccctt |
48952177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 48911410 - 48911474
Alignment:
| Q |
606 |
tacttcattccatacttagcagcagggcacatgatccctctatgtgacatagcttctctctttgc |
670 |
Q |
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| T |
48911410 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgc |
48911474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 658
Target Start/End: Complemental strand, 48966484 - 48966418
Alignment:
| Q |
592 |
gaccactcaaactttacttcattccatacttagcagcagggcacatgatccctctatgtgacatagc |
658 |
Q |
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| T |
48966484 |
gaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagc |
48966418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 566 - 772
Target Start/End: Original strand, 496 - 699
Alignment:
| Q |
566 |
cagtgtctcagctacaacaatggatagaccactcaaactttacttcattccatacttagcagcagggcacatgatccctctatgtgacatagcttctctc |
665 |
Q |
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| T |
496 |
cagtgtctcatccacaacaatggacaaaccactcaaactttacttcattccatatctagcagcaggtcacatgatccctctttgtgacattgcctctctc |
595 |
T |
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| Q |
666 |
tttgcttcacgtggccactttgttacaatcataaccgctcattcaaatgctaaaatccttcccaaatctaacaacaacttcaacgttcaaacctttcaat |
765 |
Q |
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| T |
596 |
tttgcttcacgtggccactttgttaaaatcatcaccactccttcaaacgctcaaatcctacccaaatc---caacaacttcaacgttcacacctttcaat |
692 |
T |
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| Q |
766 |
tcccttc |
772 |
Q |
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| T |
693 |
tcccttc |
699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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