View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164-Insertion-4 (Length: 670)
Name: NF5164-Insertion-4
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 106 - 670
Target Start/End: Original strand, 10024292 - 10024871
Alignment:
| Q |
106 |
tttgagactttattatgcaccatatattgaagaaaagaaatgataaccaatctgtattttaggactgtaagagatcttaaaccaagactcccttcctctt |
205 |
Q |
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| T |
10024292 |
tttgagactttatgatgcaccatat--tgaagaaaagaaatgataaccaatctgtattttaggactgtaagagatcttaaaccaagactcccttcctctt |
10024389 |
T |
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| Q |
206 |
tgggtttacaaactttgcgccatgctacaattaccacctttctcttctcagtgtccccactccatatgaaatttcttgtacaaggattgaaactgg---- |
301 |
Q |
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| T |
10024390 |
tgggtttacaaactttgtgccatgctacaattaccacctttctcttctcagtgtccccactccatatgaaatttcttgtacaaggattgaaactggcctg |
10024489 |
T |
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| Q |
302 |
-----------aaggatctgcatcatcatactttgtattacagagattacaagttgagttgtgtcggctatagaaaggagagaggctttccaagaagaca |
390 |
Q |
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| T |
10024490 |
gagtaaactgaaaggatctgcatcatcatactttgtattacagagattacaagttgagttttgtcggctatagaaaggagagaggctttccaagaaggca |
10024589 |
T |
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| Q |
391 |
atttaaatagcttatggtctccctctaaagatagggacacctaagtatatgaatgcatggaagataaccaatgtttaagcgtagaaaatgaacaagctga |
490 |
Q |
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| T |
10024590 |
atttaaatagcttatggtctccctctaaagatagggacacctaagtatatgaatgcatggaagataaccaatgtttaagcgtagcaaatgaacaagctga |
10024689 |
T |
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| Q |
491 |
gatagtctgctagcattaatggaacc---------agttggcttaaaagggttaataatctaaccataacaggctgcataatcaatgaaaagttgtttaa |
581 |
Q |
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| T |
10024690 |
gatagtctgctagcattaatggaaccagtgtacaaagttggcttaaaagggttaataatctaa----aacaggctgcataatcaatgaaaa---gtttaa |
10024782 |
T |
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| Q |
582 |
gagtcagaaggcaagactttttccctttgcaaaatatcatcacattgtcagcataaagtgtgtgagatggcacatgtaagtttcttgta |
670 |
Q |
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| T |
10024783 |
gagtcagaaggcaagactttttccctttgcaaaatatcatcacattgtcagcataaagtgtgtgagatggcacatgtaagtttcttgta |
10024871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 10023864 - 10023961
Alignment:
| Q |
12 |
ttcctttaatttctcatcagtggggaccctatcatgcataatcctccaacctagcaaggatttattaggagggatatcagatgaccaaacattctttg |
109 |
Q |
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| T |
10023864 |
ttcctttaatttctcatcagtggggaccctatattgcataatcctccaacctagcaaggatttattaggagggatatcagatgaccaaacattctttg |
10023961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 39917 - 39816
Alignment:
| Q |
8 |
ctctttcctttaatttctcatcagtggggaccctatcatgcataatcctccaacctagcaaggatttattaggagggatatcagatgaccaaacattctt |
107 |
Q |
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| T |
39917 |
ctctttccttcaacttcttataagtggaaaccctatcttgcattatcctccaagctagcaaggatttggtgggaggaatatcgaaggaccaaacattctt |
39818 |
T |
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| Q |
108 |
tg |
109 |
Q |
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| T |
39817 |
tg |
39816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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