View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164-Insertion-5 (Length: 567)
Name: NF5164-Insertion-5
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Complemental strand, 6286035 - 6285479
Alignment:
| Q |
8 |
aatatatgtatatttgtttgcacttcaagccggccgaagcatcttttgaaaatttgcttatgacatcttcaatgtcatctcatctcatataaacttaact |
107 |
Q |
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| T |
6286035 |
aatatatgtatatttgtttgcacttcaagccggccgaagcatcttttgaaaatttgcttatgacatcttcaatgtcatctcat-----ataaacttaact |
6285941 |
T |
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| Q |
108 |
ttagtaattaaacttaccatatttagtgctcaaagaaaagcacatacaccaataatttcacaacacattgtatattgcagtcacagtcattttttgtcaa |
207 |
Q |
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| T |
6285940 |
ttagtaattatacttaccatatttagtgctcaaagaaaagcgcatacaccaataatttcacaacacattgtatattgcagtcacagtcattttttgtcaa |
6285841 |
T |
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| Q |
208 |
tctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatatacaacataggtaataactttcaccaataagatcaata |
307 |
Q |
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| T |
6285840 |
tctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatatacaacataggtaataactttcaccaataagatcaata |
6285741 |
T |
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| Q |
308 |
catatatgatataaatgcatgttaccaacatgcattgtaaactc--aaactaaaagaaaccaaaacatgggatctatttctgaagatattcatgttcttc |
405 |
Q |
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| T |
6285740 |
catatatgatataaatgcatgttaccaacatgcattgtaaactcaaaaactaaaagaaaccaaaacatgggatctatttctgaagatattcatgttcttc |
6285641 |
T |
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| Q |
406 |
caaaatgttcaccttttgaagtagaagaagatgatgatgcatgtctctctgctatgcttctttgttgtggtccaatgatttatacttctgtgttaaaatc |
505 |
Q |
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| T |
6285640 |
caaaatgttcaccttttgaagtagtagaagatgatgatgcatgtctctctgctatgcttctttgttgtggtccaatgatttatacttctgtgttaaaatc |
6285541 |
T |
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| Q |
506 |
tgccattgaattaaacctatttgatattatatcaaaggtaaatccaccaggtgtttcagcat |
567 |
Q |
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| T |
6285540 |
tgcaattgaattaaacctatttgatattatatcaaaggcaaatccaccaggtgtttcagcat |
6285479 |
T |
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