View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5164-Insertion-6 (Length: 575)

Name: NF5164-Insertion-6
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5164-Insertion-6
NF5164-Insertion-6
[»] chr4 (23 HSPs)
chr4 (251-575)||(42265975-42266299)
chr4 (251-575)||(48701742-48702066)
chr4 (251-575)||(30950104-30950429)
chr4 (251-498)||(42270694-42270941)
chr4 (251-490)||(24520031-24520270)
chr4 (251-496)||(48697131-48697377)
chr4 (251-497)||(30945476-30945723)
chr4 (274-496)||(10427376-10427597)
chr4 (288-483)||(48782850-48783031)
chr4 (274-372)||(1979279-1979375)
chr4 (345-443)||(17248015-17248112)
chr4 (210-252)||(30945718-30945760)
chr4 (210-252)||(30950424-30950466)
chr4 (210-256)||(24520265-24520311)
chr4 (210-256)||(48697372-48697418)
chr4 (210-256)||(48702061-48702107)
chr4 (210-256)||(42265934-42265980)
chr4 (210-256)||(42270653-42270699)
chr4 (417-494)||(36615361-36615438)
chr4 (417-485)||(30165900-30165968)
chr4 (392-430)||(1979567-1979604)
chr4 (210-252)||(10427324-10427366)
chr4 (476-517)||(1999189-1999230)
[»] chr3 (15 HSPs)
chr3 (251-575)||(5823196-5823520)
chr3 (251-575)||(2817184-2817509)
chr3 (251-496)||(5818513-5818758)
chr3 (251-496)||(54545954-54546200)
chr3 (343-496)||(24659136-24659287)
chr3 (382-488)||(4579254-4579360)
chr3 (310-482)||(31204781-31204950)
chr3 (301-458)||(35977103-35977258)
chr3 (210-252)||(54545917-54545959)
chr3 (452-508)||(25877086-25877142)
chr3 (210-256)||(5818753-5818799)
chr3 (210-256)||(5823515-5823561)
chr3 (209-252)||(4579135-4579178)
chr3 (210-252)||(24671250-24671292)
chr3 (274-343)||(24671173-24671240)
[»] chr8 (6 HSPs)
chr8 (251-575)||(9444013-9444337)
chr8 (251-496)||(9439372-9439617)
chr8 (210-256)||(9439612-9439658)
chr8 (210-256)||(9444332-9444378)
chr8 (423-479)||(4799315-4799371)
chr8 (424-497)||(4844870-4844943)
[»] chr5 (10 HSPs)
chr5 (251-575)||(41718482-41718806)
chr5 (251-496)||(34360028-34360273)
chr5 (251-496)||(41723208-41723453)
chr5 (251-496)||(29585300-29585545)
chr5 (251-477)||(34352320-34352546)
chr5 (210-252)||(29585540-29585582)
chr5 (210-256)||(34352279-34352325)
chr5 (210-256)||(34359987-34360033)
chr5 (210-256)||(41718441-41718487)
chr5 (210-256)||(41723167-41723213)
[»] chr6 (14 HSPs)
chr6 (251-575)||(27878630-27878956)
chr6 (251-496)||(1234773-1235018)
chr6 (251-496)||(26976131-26976376)
chr6 (251-496)||(27873990-27874235)
chr6 (310-496)||(18968007-18968194)
chr6 (274-497)||(30986603-30986830)
chr6 (274-450)||(30966747-30966923)
chr6 (445-575)||(30967674-30967804)
chr6 (305-491)||(21966677-21966860)
chr6 (328-575)||(23012421-23012667)
chr6 (210-252)||(27878951-27878993)
chr6 (210-256)||(1234732-1234778)
chr6 (210-256)||(26976371-26976417)
chr6 (210-256)||(27874230-27874276)
[»] chr2 (16 HSPs)
chr2 (251-487)||(5198664-5198900)
chr2 (333-575)||(825632-825875)
chr2 (251-574)||(15602949-15603272)
chr2 (333-496)||(830288-830452)
chr2 (274-489)||(28715857-28716070)
chr2 (310-487)||(30396920-30397096)
chr2 (276-574)||(13843719-13844014)
chr2 (336-496)||(31592910-31593068)
chr2 (274-496)||(13840240-13840456)
chr2 (274-401)||(8004167-8004292)
chr2 (210-252)||(830220-830262)
chr2 (210-252)||(825564-825606)
chr2 (210-256)||(5198895-5198941)
chr2 (361-476)||(12175768-12175881)
chr2 (432-481)||(9358158-9358207)
chr2 (326-435)||(42117769-42117876)
[»] chr7 (9 HSPs)
chr7 (274-491)||(16183636-16183852)
chr7 (274-520)||(8139940-8140183)
chr7 (270-496)||(30235112-30235339)
chr7 (310-575)||(8138385-8138645)
chr7 (493-575)||(25441073-25441155)
chr7 (338-483)||(5102606-5102749)
chr7 (381-496)||(36528415-36528529)
chr7 (210-252)||(30235053-30235096)
chr7 (210-252)||(16183862-16183904)
[»] scaffold0074 (2 HSPs)
scaffold0074 (310-496)||(27226-27413)
scaffold0074 (210-252)||(27457-27499)
[»] chr1 (5 HSPs)
chr1 (274-496)||(46191327-46191546)
chr1 (310-491)||(30697120-30697300)
chr1 (310-496)||(4130215-4130401)
chr1 (210-252)||(46191275-46191317)
chr1 (274-354)||(30674787-30674865)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 251 - 575
Target Start/End: Original strand, 42265975 - 42266299
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265975 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 42266074  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266075 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 42266174  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42266175 cttattttagctgcgtgataatattttgttactctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtgg 42266274  T
Q  551 agtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||    
T  42266275 agtggtaagaaaaatcttagtatgc 42266299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 48702066 - 48701742
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  48702066 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 48701967  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701966 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 48701867  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  48701866 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtgg 48701767  T
Q  551 agtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||    
T  48701766 agtggtaagaaaaatcttagtatgc 48701742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 30950429 - 30950104
Alignment:
Q  251 tttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 348  Q
    |||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30950429 tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttcc 30950330  T
Q  349 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 448  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30950329 acttagtgaaagttctctactcttgccccgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctctt 30950231  T
Q  449 ctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagt 548  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  30950230 atcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagctcctggttcgtagctgttattccgctgtgataaactagt 30950131  T
Q  549 ggagtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||||    
T  30950130 ggagtggtaagaaaaatcttagtatgc 30950104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 251 - 498
Target Start/End: Original strand, 42270694 - 42270941
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270694 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 42270793  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270794 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 42270893  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagt 498  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42270894 cttattttagctgcgtgataatattttgttactctggtatctaacagt 42270941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 251 - 490
Target Start/End: Complemental strand, 24520270 - 24520031
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24520270 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 24520171  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520170 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 24520071  T
Q  451 cttattttagctgcgtgataatattttgttactctggtac 490  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  24520070 cttattttagttgcgtgataatattttgttactctggtac 24520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 48697377 - 48697131
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  48697377 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 48697278  T
Q  351 ttagtgaaagttctctactcttgccccgtggtt-ttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtc 449  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48697277 ttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttc 48697178  T
Q  450 tcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48697177 tcttattttagctgcgtgataatattttgttactctggtacctaaca 48697131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 251 - 497
Target Start/End: Complemental strand, 30945723 - 30945476
Alignment:
Q  251 tttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 348  Q
    |||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30945723 tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttcc 30945624  T
Q  349 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 448  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30945623 acttagtgaaagttctctactcttgccccgtgatttttt-cccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctctt 30945525  T
Q  449 ctcttattttagctgcgtgataatattttgttactctggtacctaacag 497  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30945524 ctcttattttagctgcgtgataatattttgttactctgatacctaacag 30945476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 274 - 496
Target Start/End: Original strand, 10427376 - 10427597
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactctt 372  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||    
T  10427376 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttt 10427473  T
Q  373 gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat 472  Q
     |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10427474 tccccgtagttttttccccttatttgttgaggggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataat 10427573  T
Q  473 attttgttactctggtacctaaca 496  Q
    ||| ||||||||||||||||||||    
T  10427574 attctgttactctggtacctaaca 10427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 288 - 483
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
Q  288 ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt 387  Q
    |||||||||||||||||||||||||  | |||||||||||||||||| | |||||||||||||||||||||||||||         |||| ||  |||||    
T  48782850 ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttct---------ccccatg--ttttt 48782936  T
Q  388 ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact 483  Q
    ||| ||||||||||||   ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||   |||||||||||||||| ||||    
T  48782937 ccctttatttgttgagaaatttccacgt-aaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact 48783031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 1979279 - 1979375
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactctt 372  Q
    |||||||||| |||||||||||||||||||| | ||| ||||||| ||||  ||||||||| ||||||||||||| |||| |||||||| |||||||||    
T  1979279 gtattctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaatttcttcctcttactgaaagttatctactctt 1979375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
Q  345 ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt 443  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| |||||||    
T  17248015 ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt 17248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 30945718 - 30945760
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30945718 gagaaacctcacaggagaaactaatttttctctctatattttt 30945760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 30950424 - 30950466
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30950424 gagaaacctcacaggagaaactaatttttctctctatattttt 30950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 24520265 - 24520311
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  24520265 gagaaacctcacaggagaaactatttttcctctctatattttttctc 24520311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 48697372 - 48697418
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  48697372 gagaaacctcacaggagaaactatttttcctctctatattttttctc 48697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 48702061 - 48702107
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  48702061 gagaaacctcacaggagaaactatttttcctctctatattttttctc 48702107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 42265980 - 42265934
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  42265980 gagaaacctcacaggagaagctatttttcctctctatattttttctc 42265934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 42270699 - 42270653
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  42270699 gagaaacctcacaggagaagctatttttcctctctatattttttctc 42270653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 494
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
Q  417 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 494  Q
    ||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||||    
T  36615438 aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa 36615361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 485
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
Q  417 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 485  Q
    ||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| ||||||||||||||    
T  30165900 aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct 30165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
Q  392 ttatttgttgaggggtttccacgtaaaatattgtgtgtt 430  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1979567 ttatttgttgaggggtttccacgt-aaatattgtgtgtt 1979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 10427366 - 10427324
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  10427366 gagaaacctcacaggagaaactatatttcctctctatattttt 10427324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 517
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
Q  476 ttgttactctggtacctaacagtggtatcagagcccttggtt 517  Q
    |||||| |||| |||||||||||||||||||||| |||||||    
T  1999189 ttgttattctgatacctaacagtggtatcagagcacttggtt 1999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 5823520 - 5823196
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5823520 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 5823421  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823420 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 5823321  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5823320 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtgg 5823221  T
Q  551 agtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||    
T  5823220 agtggtaagaaaaatcttagtatgc 5823196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 2817509 - 2817184
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 348  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| || |||||||||||||    
T  2817509 tttctcctagtttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttcc 2817410  T
Q  349 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 448  Q
    ||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2817409 acttagtgagagttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctctt 2817311  T
Q  449 ctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||| || ||||||||||    
T  2817310 ctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagt 2817211  T
Q  549 ggagtggtaagaaaaatcttagtatgc 575  Q
    || ||||||||||||||||||||||||    
T  2817210 ggtgtggtaagaaaaatcttagtatgc 2817184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 5818758 - 5818513
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5818758 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 5818659  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818658 ttagtgaaagttctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 5818559  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  5818558 cttattttagttgcgtgataatattttgttactctggtacctaaca 5818513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 251 - 496
Target Start/End: Original strand, 54545954 - 54546200
Alignment:
Q  251 tttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 348  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  54545954 tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatcc 54546053  T
Q  349 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 448  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |    
T  54546054 acttagtgaaagttctctactctagccccgtggttttttccccttatttgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctcat 54546152  T
Q  449 ctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54546153 ctcttattttagctgcgtgataatattttgttactctggtacctaaca 54546200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 343 - 496
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
Q  343 tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt 442  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24659287 tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt 24659190  T
Q  443 tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  24659189 tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca 24659136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 382 - 488
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
Q  382 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta 4579353  T
Q  482 ctctggt 488  Q
    |||||||    
T  4579354 ctctggt 4579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 310 - 482
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtt 408  Q
    |||||||| |||||||||||  ||  |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||    
T  31204950 ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt 31204853  T
Q  409 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac 482  Q
    ||||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| ||||||||||||||    
T  31204852 tccacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac 31204781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 301 - 458
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
Q  301 gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt 399  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||  || | ||||||||||  |||  ||||||||  ||| |||    
T  35977103 gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt 35977200  T
Q  400 tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt 458  Q
    ||| || |||  |||| ||||||||| |||||| || ||||||||||  ||||||||||    
T  35977201 tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt 35977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 54545959 - 54545917
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54545959 gagaaacctcacaggagaaactaatttttctctctatattttt 54545917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 508
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
Q  452 ttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagag 508  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  25877086 ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag 25877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 5818753 - 5818799
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  5818753 gagaaacctcacaggagaaactatttttcctctctatattttttctc 5818799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 5823515 - 5823561
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  5823515 gagaaacctcacaggagaaactatttttcctctctatattttttctc 5823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 4579178 - 4579135
Alignment:
Q  209 tgagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||    
T  4579178 tgagaaacctcacaggagaaactatatttcctctctatattttt 4579135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 24671250 - 24671292
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  24671250 gagaaacctcacaggagaaactatatttcctctctatattttt 24671292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 24671240 - 24671173
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaattt 343  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||||||||||| ||| ||||||||    
T  24671240 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattt 24671173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 9444337 - 9444013
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9444337 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 9444238  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444237 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 9444138  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9444137 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtgg 9444038  T
Q  551 agtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||    
T  9444037 agtggtaagaaaaatcttagtatgc 9444013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 9439617 - 9439372
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9439617 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 9439518  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439517 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 9439418  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9439417 cttattttagctgcgtgataatattttgttactctggtacctaaca 9439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 9439612 - 9439658
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  9439612 gagaaacctcacaggagaaactatttttcctctctatattttttctc 9439658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 9444332 - 9444378
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  9444332 gagaaacctcacaggagaaactatttttcctctctatattttttctc 9444378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
Q  423 tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt 479  Q
    |||||||||| || |||||||||| |||||||||||||| | |||||||||||||||    
T  4799315 tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt 4799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 497
Target Start/End: Original strand, 4844870 - 4844943
Alignment:
Q  424 gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 497  Q
    ||||||||| ||| |||| ||||  ||||||||||  | |||||||||| ||||||| |||| |||||||||||    
T  4844870 gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacag 4844943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 251 - 575
Target Start/End: Original strand, 41718482 - 41718806
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  41718482 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 41718581  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718582 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 41718681  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  41718682 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtgg 41718781  T
Q  551 agtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||    
T  41718782 agtggtaagaaaaatcttagtatgc 41718806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Original strand, 34360028 - 34360273
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34360028 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 34360127  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34360128 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtct 34360227  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34360228 cttattttagctgcgtgataatattttgttactctggtacctaaca 34360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Original strand, 41723208 - 41723453
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  41723208 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 41723307  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723308 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 41723407  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41723408 cttattttagctgcgtgataatattttgttactctggtacctaaca 41723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 29585545 - 29585300
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  29585545 tttctcctagtttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccac 29585446  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585445 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 29585346  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  29585345 cttattttagctgcatgataatattttgttactctgatacctaaca 29585300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 251 - 477
Target Start/End: Original strand, 34352320 - 34352546
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34352320 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 34352419  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352420 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 34352519  T
Q  451 cttattttagctgcgtgataatatttt 477  Q
    |||||||||||||||||||||||||||    
T  34352520 cttattttagctgcgtgataatatttt 34352546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 29585540 - 29585582
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29585540 gagaaacctcacaggagaaactaatttttctctctatattttt 29585582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 34352325 - 34352279
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  34352325 gagaaatctcacaggagaaactaatttttctctctatattttttctc 34352279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 34360033 - 34359987
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  34360033 gagaaatctcacaggagaaactaatttttctctctatattttttctc 34359987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 41718487 - 41718441
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  41718487 gagaaacctcacaggagaaactatttttcctctctatattttttctc 41718441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 41723213 - 41723167
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  41723213 gagaaacctcacaggagaaactatttttcctctctatattttttctc 41723167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 251 - 575
Target Start/End: Complemental strand, 27878956 - 27878630
Alignment:
Q  251 tttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 348  Q
    |||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878956 tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttcc 27878857  T
Q  349 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878856 acttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgt 27878757  T
Q  449 ctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27878756 ctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccctggttcgtagctgttattccgctgtgataaactagt 27878657  T
Q  549 ggagtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||||||||||||    
T  27878656 ggagtggtaagaaaaatcttagtatgc 27878630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Original strand, 1234773 - 1235018
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  1234773 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 1234872  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234873 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 1234972  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1234973 cttattttagctgcgtgataatattttgttactctggtacctaaca 1235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 26976376 - 26976131
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26976376 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccac 26976277  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976276 ttagtgaaagttctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 26976177  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26976176 cttattttagctgcgtgataatattttgttactctggtacctaaca 26976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 251 - 496
Target Start/End: Complemental strand, 27874235 - 27873990
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874235 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 27874136  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27874135 ttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttct 27874036  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  27874035 cttattttagatgcgtgataatattttgttactctggtacctaaca 27873990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 310 - 496
Target Start/End: Original strand, 18968007 - 18968194
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 408  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18968007 ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtt 18968106  T
Q  409 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968107 tccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 18968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 274 - 497
Target Start/End: Original strand, 30986603 - 30986830
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30986603 gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttg 30986702  T
Q  374 ccccgtgg--ttttttccccttatttgttgagggg---tttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtga 468  Q
    ||||||||  ||||||  |||||||||||||||||   ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  30986703 ccccgtggttttttttttccttatttgttgaggggtactttccacgt-aaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtga 30986801  T
Q  469 taatattttgttactctggtacctaacag 497  Q
    |||||||||||||||||| ||||||||||    
T  30986802 taatattttgttactctgatacctaacag 30986830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 274 - 450
Target Start/End: Original strand, 30966747 - 30966923
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30966747 gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttg 30966846  T
Q  374 ccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||| |||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30966847 ccccgtgattttatttcccttatttgttgatgggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 445 - 575
Target Start/End: Original strand, 30967674 - 30967804
Alignment:
Q  445 tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac 544  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30967674 tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac 30967773  T
Q  545 tagtggagtggtaagaaaaatcttagtatgc 575  Q
    |||||| ||||||||||||||||||||||||    
T  30967774 tagtggtgtggtaagaaaaatcttagtatgc 30967804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 305 - 491
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
Q  305 ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg 404  Q
    |||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| ||||||    
T  21966677 ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg 21966775  T
Q  405 ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 491  Q
    ||||||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |||||||    
T  21966776 ggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc 21966860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 328 - 575
Target Start/End: Complemental strand, 23012667 - 23012421
Alignment:
Q  328 agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt 427  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||  |||||||| ||| | |||||| || | ||||||||||||| || |||||    
T  23012667 agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt 23012571  T
Q  428 gttcagttcctctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctg 525  Q
    ||||| ||| |||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| |||| ||  ||  ||||| |||| |||||| ||    
T  23012570 gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg 23012471  T
Q  526 ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgc 575  Q
    || |||| |    | |||| |||| |||||||||||||| ||||||||||    
T  23012470 ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgc 23012421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 27878951 - 27878993
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27878951 gagaaacctcacaggagaaactaatttttctctctatattttt 27878993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 1234778 - 1234732
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  1234778 gagaaacctcacaggagaaactatttttcctctctatattttttctc 1234732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 26976371 - 26976417
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  26976371 gagaaacctcacaggagaaactatttttcctctctatattttttctc 26976417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 27874230 - 27874276
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  27874230 gagaaacctcacaggagaagctatttttcctctctatattttttctc 27874276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 251 - 487
Target Start/End: Complemental strand, 5198900 - 5198664
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  5198900 tttctcctagtttgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccac 5198801  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198800 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 5198701  T
Q  451 cttattttagctgcgtgataatattttgttactctgg 487  Q
    |||||||||||||||||||||||||||||||||||||    
T  5198700 cttattttagctgcgtgataatattttgttactctgg 5198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 333 - 575
Target Start/End: Original strand, 825632 - 825875
Alignment:
Q  333 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  825632 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc 825731  T
Q  432 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  825732 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc 825831  T
Q  532 cgctgtgataaactagtggagtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  825832 cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgc 825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 251 - 574
Target Start/End: Original strand, 15602949 - 15603272
Alignment:
Q  251 tttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccac 350  Q
    |||||| ||||  ||||||||| ||||||||||||||| |||| ||| |||||||||||| |||| || ||||||||||||||| |||||||||||| ||    
T  15602949 tttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaattgtacactccatgcatttagagagaggtcttgtaatttcttctac 15603048  T
Q  351 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603049 ttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtct 15603148  T
Q  451 cttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtgg 550  Q
    ||||||| |  |||||||||||||||| |||||||   ||| ||||||| |||||||| | ||||||||||  |||||||||| ||  | ||||| ||||    
T  15603149 cttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcagagtcattggttcgtaattgttattccgatgcaaaaaactggtgg 15603248  T
Q  551 agtggtaagaaaaatcttagtatg 574  Q
    |||||||||||| |||||||||||    
T  15603249 agtggtaagaaatatcttagtatg 15603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 333 - 496
Target Start/End: Original strand, 830288 - 830452
Alignment:
Q  333 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 431  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  830288 tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 830387  T
Q  432 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  830388 agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca 830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 274 - 489
Target Start/End: Original strand, 28715857 - 28716070
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    ||||||||||||||||| || |  ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||     
T  28715857 gtattctcctatttataggaaacggtggtaattgtactctccttgcatttagagagatgtcctgtaatttcttccactttgtgaaagttctctattcttc 28715956  T
Q  374 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 473  Q
     |  |||| |||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||  || |||||||||    
T  28715957 tcttgtgg-tttttccccttatttaatgaggggtttccacgt-aaatattgtgtgttcaattcctcttttgtcgtctcttattttaaatgtgtgataata 28716054  T
Q  474 ttttgttactctggta 489  Q
    ||||||||||||||||    
T  28716055 ttttgttactctggta 28716070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 30397096 - 30396920
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtt 408  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| ||||||||||||||||||||    
T  30397096 ctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtt 30396997  T
Q  409 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 487  Q
    || ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30396996 tcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg 30396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 276 - 574
Target Start/End: Complemental strand, 13844014 - 13843719
Alignment:
Q  276 attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc 375  Q
    |||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| ||  |    
T  13844014 attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac 13843915  T
Q  376 ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctcttttctcgtctcttattttagctgcgtgataatat 474  Q
    |  |   |||||| |||||||||||||||||||||||||| ||||||  ||||||||  || || |||||||    |||| ||||  | |||||||||||    
T  13843914 ctat-aatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataatat 13843819  T
Q  475 tttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 574  Q
    ||| |||||||| || | |  |||||||| |||||| |||| ||||    ||| |||||||||   ||||| ||||||||||||||||||| ||||||||    
T  13843818 tttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtatg 13843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 496
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
Q  336 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 435  Q
    ||||||||||| |  ||||||||||||||||||||||  |  ||||||||||  | |||||| ||||| | |||||||||||| |||||| ||||  |||    
T  31593068 tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt 31592971  T
Q  436 cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| ||||    
T  31592970 cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca 31592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 274 - 496
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    |||||||  ||||| ||||||||| | ||||||||||||||||| |||||||||||||||  |||||||| ||  |||| || ||| || ||||||||||    
T  13840456 gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg 13840358  T
Q  374 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 473  Q
    | || ||  |||| |||||| ||||||||||  ||  || || ||||||  ||||||| ||||||| |||||| ||| ||||| ||  | ||||||||||    
T  13840357 ctccatg--ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataata 13840263  T
Q  474 ttttgttactctggtacctaaca 496  Q
    |||||||| ||||||||| ||||    
T  13840262 ttttgttattctggtacccaaca 13840240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 8004167 - 8004292
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    ||||||||||||||||||||||||||| |||||||||||| |||  ||||| ||||||||  | |||||||||||| | |||||||||| |||| || |     
T  8004167 gtattctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata 8004265  T
Q  374 ccccgtggttttttccccttatttgttg 401  Q
    |||||| | ||||||| |||||||||||    
T  8004266 ccccgttg-tttttcctcttatttgttg 8004292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 830262 - 830220
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  830262 gagaaacctcacaggagaaactaatttttctctctatattttt 830220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 825606 - 825564
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  825606 gagaaacctcgcaggagaaactaatttttctctctatattttt 825564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 5198895 - 5198941
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttttctc 256  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  5198895 gagaaacctcacaggagaaactatttttcctctctatattttttctc 5198941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 476
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
Q  361 ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag 460  Q
    ||||||||||||| ||  | |||||||||  |||||| |||||  ||||||||  ||||||||||||||||| || || |||| || ||| |||||||||    
T  12175881 ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag 12175784  T
Q  461 ctgcgtgataatattt 476  Q
     |||||||||||||||    
T  12175783 ttgcgtgataatattt 12175768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
Q  432 agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 481  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||| ||||    
T  9358207 agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta 9358158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
Q  326 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 425  Q
    ||||||||| | ||||||||  |  ||| |||||||| |||||| ||| | ||||||||| ||||||||||  ||||| |||||| |||| |||||||||    
T  42117769 agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgt 42117866  T
Q  426 gtgttcagtt 435  Q
     |||||||||    
T  42117867 atgttcagtt 42117876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 6e-94; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 274 - 491
Target Start/End: Complemental strand, 16183852 - 16183636
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactctt 372  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16183852 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactctt 16183755  T
Q  373 gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183754 gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat 16183655  T
Q  473 attttgttactctggtacc 491  Q
    |||||||||||||||||||    
T  16183654 attttgttactctggtacc 16183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 274 - 520
Target Start/End: Complemental strand, 8140183 - 8139940
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg 373  Q
    ||||||||||||||  ||||||||| |||||||   ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| ||||     
T  8140183 gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta 8140086  T
Q  374 ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata 473  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| |||||||||    
T  8140085 ccccatggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataata 8139987  T
Q  474 ttttgttactctggtacctaacagtggtatcagagcccttggttcgt 520  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||||    
T  8139986 ttttgttactctggtacccaacagtggtattagagccattggttcgt 8139940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 270 - 496
Target Start/End: Original strand, 30235112 - 30235339
Alignment:
Q  270 gtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctac 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||| | ||| |||||||| |||||    
T  30235112 gtttgtattctcctatttataagagagagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctac 30235211  T
Q  369 tcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtg 467  Q
    ||||  ||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| ||     
T  30235212 tcttatcccgtggtttttttccccttattcgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcattttttattttagctgtgta 30235310  T
Q  468 ataatattttgttactctggtacctaaca 496  Q
    ||||||||||| |||||||||||| ||||    
T  30235311 ataatattttgctactctggtacccaaca 30235339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 310 - 575
Target Start/End: Complemental strand, 8138645 - 8138385
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 409  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| ||||||||    
T  8138645 ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt 8138546  T
Q  410 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagc 509  Q
    |||| | || || |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| |||||    
T  8138545 ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc 8138447  T
Q  510 ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgc 575  Q
    | ||||||||| |  ||||||| || |     |||| || ||||||||||||||||||||||||||    
T  8138446 cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgc 8138385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 493 - 575
Target Start/End: Original strand, 25441073 - 25441155
Alignment:
Q  493 aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgc 575  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25441073 aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgc 25441155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 483
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
Q  338 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 437  Q
    |||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| ||    
T  5102749 taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc 5102653  T
Q  438 tc-ttttctcgtctcttattttagctgcgtgataatattttgttact 483  Q
    || ||||||| ||| ||||||||| || |||||||||||||||||||    
T  5102652 tctttttctcatcttttattttagttgagtgataatattttgttact 5102606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 381 - 496
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
Q  381 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 480  Q
    |||||||  ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||  || ||||||    
T  36528529 gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt 36528431  T
Q  481 actctggtacctaaca 496  Q
    |||||| |||| ||||    
T  36528430 actctgatacccaaca 36528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 30235096 - 30235053
Alignment:
Q  210 gagaaacctcaca-ggagaaactaatttttctctctatattttt 252  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  30235096 gagaaacctcataaggagaaactaatttttctctctatattttt 30235053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 16183862 - 16183904
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  16183862 gagaaacctcacaggagaaactatatttcctctctatattttt 16183904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 310 - 496
Target Start/End: Complemental strand, 27413 - 27226
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 408  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27413 ctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 27314  T
Q  409 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27313 tccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 27457 - 27499
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  27457 gagaaacctcacaggagaaactatatttcctctctatattttt 27499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 274 - 496
Target Start/End: Original strand, 46191327 - 46191546
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactctt 372  Q
    ||||||||||||||  ||||||||| |||||||   |||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  46191327 gtattctcctatttc-aagagagag-ggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactctt 46191424  T
Q  373 gccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataat 472  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  46191425 gtcccgtggttttttccccttatttgttgaggggtttccacgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataat 46191522  T
Q  473 attttgttactctggtacctaaca 496  Q
    |||||||||||||||| |||||||    
T  46191523 attttgttactctggttcctaaca 46191546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 310 - 491
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt 409  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30697300 ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt 30697201  T
Q  410 ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 491  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30697200 ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc 30697120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 310 - 496
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
Q  310 ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt 408  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  4130215 ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt 4130314  T
Q  409 tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 496  Q
    ||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||    
T  4130315 tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca 4130401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 46191317 - 46191275
Alignment:
Q  210 gagaaacctcacaggagaaactaatttttctctctatattttt 252  Q
    |||||||||||||||||||||||  ||| ||||||||||||||    
T  46191317 gagaaacctcacaggagaaactatatttcctctctatattttt 46191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 30674865 - 30674787
Alignment:
Q  274 gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag 354  Q
    ||||||||||||| | |||||||| || ||||||| |||||||| | ||||| |||||||  | |||||||||||||||||    
T  30674865 gtattctcctatt-acaagagagaatg-taattgttctctccttatttttagtgagaggttgtataatttcttccacttag 30674787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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