View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5164-Insertion-7 (Length: 525)
Name: NF5164-Insertion-7
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 99 - 458
Target Start/End: Original strand, 48065797 - 48066152
Alignment:
| Q |
99 |
ttacttgtttaggttgaaggtagaaatttgaggttgttaagagaagaaaacgtttgagagggaagataatgattattcacccggatatggtttgaagtac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48065797 |
ttacttgtttaggttgaaggtagaaatttgaggttgttaagagaagaaaacgtttgagagggaagacaatgattattcacccggatatggtttgaagtac |
48065896 |
T |
|
| Q |
199 |
ggattgagtggggtatatgtatgtatgtggtctttatctttttactaagattgtaacttaccaagtttgtttgtggttctaaatgttataattttagcta |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48065897 |
ggattgagtggggtatatg----tatgtggtctttatctttttactaagattgtaacttaccaagtttgtttgtggttctaaatgttataattttagcta |
48065992 |
T |
|
| Q |
299 |
caagttttttaaatttttcacctaaaaaattgcaccttggaataggaggatttcccttcattcaaattttctaccgttcatgtatttgcattatcttcta |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48065993 |
caacttttttaaatttttcacctaaaaaattgcaccttggaataggaggatttcccttcattcaaattttctaccgttcatgtatttgcattatcttcta |
48066092 |
T |
|
| Q |
399 |
tggtgnnnnnnnnnnnncctcaccccatattcaaattttgtcttttcctatcgtcatacg |
458 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066093 |
tggtgtttttgttttttcctcaccccatattcaaattttgtcttttcctatcgtcatacg |
48066152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University