View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164-Insertion-9 (Length: 254)
Name: NF5164-Insertion-9
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 46642333 - 46642541
Alignment:
| Q |
30 |
gaattcatgttttatgaacctcttcattcgattatcaccaaacacagaagtgtgttgatttttctggctttcaaccatcctgtttggatcactatcagtt |
129 |
Q |
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| T |
46642333 |
gaattcatgttttatgatcctcttcattcgattatcaccaaacacagaagtgtgttgatttttctggctttcaaccatcttgtttggatcactatcagtt |
46642432 |
T |
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| Q |
130 |
ttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgtgaatcatcagttgaacagacgcctttactctctttcagaagattcg |
229 |
Q |
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| T |
46642433 |
ttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgtgaatcatcagttgaagagacgcctttactttctttcagaagattcg |
46642532 |
T |
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| Q |
230 |
tagtcatcc |
238 |
Q |
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||||||||| |
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| T |
46642533 |
tagtcatcc |
46642541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 46175820 - 46175891
Alignment:
| Q |
127 |
gttttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgtgaatcatcagttgaa |
198 |
Q |
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| T |
46175820 |
gttttattgattttctttttgtcacatatcagcatcttagcttccaccatcattggtgaatcatcagttgaa |
46175891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 46638333 - 46638257
Alignment:
| Q |
161 |
tcttagcttccaccattcttcgtgaatcatcagttgaacagacgcctttactctctttcagaagattcgtagtcatc |
237 |
Q |
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| T |
46638333 |
tcttagcttccaccttccttggtgaatcatcaattgaagagccacccttactttctctcagaagactagtagtcatc |
46638257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 15768704 - 15768790
Alignment:
| Q |
40 |
tttatgaacctcttcattcgattatcaccaaacacagaagtgtgttgatttttctggctttcaaccatcctgtttggatcactatca |
126 |
Q |
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||||||| |||||||| |||||||||| ||||| || | | |||||||||| | ||| ||||||||||| | |||| |||| ||||| |
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| T |
15768704 |
tttatgatcctcttcagtcgattatcatcaaactcacaggcgtgttgatttgtttggttttcaaccatcttatttgcatcattatca |
15768790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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