View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5164_high_7 (Length: 379)

Name: NF5164_high_7
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5164_high_7
NF5164_high_7
[»] chr2 (1 HSPs)
chr2 (25-364)||(20044286-20044625)
[»] scaffold0013 (1 HSPs)
scaffold0013 (158-355)||(250497-250694)
[»] chr3 (3 HSPs)
chr3 (158-355)||(31196736-31196933)
chr3 (158-355)||(52771380-52771577)
chr3 (25-359)||(53976445-53976779)
[»] chr7 (1 HSPs)
chr7 (159-355)||(16254870-16255066)
[»] chr8 (2 HSPs)
chr8 (25-359)||(15191427-15191761)
chr8 (220-292)||(28302206-28302278)
[»] scaffold0014 (1 HSPs)
scaffold0014 (158-355)||(97380-97577)
[»] chr4 (2 HSPs)
chr4 (158-355)||(13986340-13986537)
chr4 (25-359)||(18252275-18252609)
[»] scaffold0164 (2 HSPs)
scaffold0164 (25-359)||(18213-18547)
scaffold0164 (25-359)||(28593-28927)
[»] chr1 (2 HSPs)
chr1 (25-359)||(49642521-49642855)
chr1 (280-364)||(51589715-51589799)
[»] chr6 (1 HSPs)
chr6 (159-292)||(26131853-26131986)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 25 - 364
Target Start/End: Original strand, 20044286 - 20044625
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20044286 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttggtgcctcgcattgctcaatccagtagcaca 20044385  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20044386 tacacagcgatgtggacatgagcaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 20044485  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatt-tttgagttcgttccaaacatcaatt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  20044486 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatccgaatgtaatctccttgtg-aaaaacattctttgagttcgttccaaacatcaatt 20044584  T
Q  324 gcgttatccagaaaaacaatactttgcgcaattgaagtttc 364  Q
    |||||||| ||||||||||||||||| ||||||| ||||||    
T  20044585 gcgttatctagaaaaacaatactttgtgcaattggagtttc 20044625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 250497 - 250694
Alignment:
Q  158 aggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgc 257  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||    
T  250497 aggaagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaaagcgaatcttgctttaatccaaagatttcgcattgc 250596  T
Q  258 aattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    |||||||||||  |||||||||| ||||| ||||||   |  |||||||| |||||||||||||| ||||| || ||||| |||||||| || |||||    
T  250597 aattcagaaattcgaatgtaatcaccttgagaaaaacgttccttgagttcattccaaacatcaatggcgttctcaagaaacacaatactctgtgcaat 250694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 31196736 - 31196933
Alignment:
Q  158 aggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgc 257  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||| || ||||||||||| || |||    
T  31196736 aggaagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaacgcgaatcttgctttaatccaaagatttcgcattgc 31196835  T
Q  258 aattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    |||||||||||  |||||||||| ||||| |||||    |  |||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||    
T  31196836 aattcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaat 31196933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 355
Target Start/End: Complemental strand, 52771577 - 52771380
Alignment:
Q  158 aggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgc 257  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||    
T  52771577 aggaagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgc 52771478  T
Q  258 aattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    |||||||||||  |||||||||| ||||| |||||    |  |||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||    
T  52771477 aattcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaat 52771380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 53976779 - 53976445
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| |||||||||||||| ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  53976779 gagaacgaaccaaatcaaaagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 53976680  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| |  || ||||| ||||| || ||||| | ||| |||||     
T  53976679 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgt 53976580  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| ||| |||||||| || |||||||| ||  ||||| |||| ||||| || ||    | ||||||||| ||||| |||||||| |    
T  53976579 gaatcttgtttcaaactaaaaatttcacattgtaattcagagatacgaatgaaatcaccttgggagaatctttctttgagttcattccatacatcaatgg 53976480  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || ||||| |||||||| ||||| |||||||||    
T  53976479 cattttccaggaaaacaatgctttgtgcaattgaa 53976445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 355
Target Start/End: Complemental strand, 16255066 - 16254870
Alignment:
Q  159 ggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgca 258  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||||||||||||| || |    
T  16255066 ggaagatatgcttcaagttcttcccatagaaccttcaatgcagtgaaaaactcagaaactgaacgcgaatcttgcttcaatccaaagatttcacattgta 16254967  T
Q  259 attcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    ||||||||||  |||||||||| ||||| |||||    |  |||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||    
T  16254966 attcagaaatacgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaat 16254870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 15191761 - 15191427
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| |||| ||||||||| ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  15191761 gagaacgaaccagatcaaaagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 15191662  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| ||||| ||||| ||||| || ||||| | ||| |||||     
T  15191661 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccatagaactttcaaggcagtgaaaaattctgtaactgaacgt 15191562  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| ||| ||||||||||| |||||||| ||  ||||| |||| ||||| || ||    | ||||||||| ||||| |||||||| |    
T  15191561 gaatcttgtttcaaactaaaaatttcacactgtaattcagagatacgaatgaaatcaccttgggagaatctctctttgagttcattccatacatcaatgg 15191462  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || ||||| |||||||| ||||| |||||||||    
T  15191461 cattttccaggaaaacaatgctttgtgcaattgaa 15191427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 28302278 - 28302206
Alignment:
Q  220 aacgcgaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaa 292  Q
    ||||||||||||||||||||||||| | || ||| |  |||||| | || |||||||| || |||||||||||    
T  28302278 aacgcgaatcttgcttcaaaccaaaaaatttacattataattcaaagatatgaatgtattcaccttgtgaaaa 28302206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 97380 - 97577
Alignment:
Q  158 aggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgc 257  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||    
T  97380 aggaagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgc 97479  T
Q  258 aattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    |||||||||||  |||||||||| ||||| |||||    |  |||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||    
T  97480 aattcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaat 97577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 158 - 355
Target Start/End: Complemental strand, 13986537 - 13986340
Alignment:
Q  158 aggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgc 257  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||    
T  13986537 aggaagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgc 13986438  T
Q  258 aattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaat 355  Q
    |||||||||||  |||||||||| ||||| |||||    |  |||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||    
T  13986437 aattcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaat 13986340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 359
Target Start/End: Complemental strand, 18252609 - 18252275
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| ||||||||||| || ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  18252609 gagaacgaaccaaatcaaacgaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 18252510  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| |  || ||||||| ||| || |||||   ||| |||||     
T  18252509 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccataacactttcaaagtagtgaaaaattctataactgaacgt 18252410  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| |||||||||||| || |||||||| ||  ||||  |||| ||||| || ||    | ||||||||| ||||| |||||||| |    
T  18252409 gaatcttgtttcaaactaaagatttcacattgtaattcagagatacgaataaaatcaccttgggagaatctttctttgagttcattccatacatcaatgg 18252310  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || |||||||||| ||| ||||| |||||||||    
T  18252309 cattttccagaaaaaaaatgctttgtgcaattgaa 18252275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 18213 - 18547
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| || ||||||||||| ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  18213 gagaacgaacaaaatcaaaagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 18312  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| |  || ||||| ||||| || ||||| | ||| |||||     
T  18313 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgt 18412  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| ||| ||||||||||| |||||||| ||  ||||| |||| ||||| || ||   || ||||||||| ||||| |||||||| |    
T  18413 gaatcttgtttcaaactaaaaatttcacactgtaattcagagatacgaatgaaatcaccttgggagaatctatctttgagttcattccatacatcaatgg 18512  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || ||||| |||||||| ||||| |||||||||    
T  18513 cattttccaggaaaacaatgctttgtgcaattgaa 18547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 28593 - 28927
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| |||| ||||||||| ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  28593 gagaacgaaccagatcaaaagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 28692  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| ||||| ||||| ||||| || ||||| | ||| |||||     
T  28693 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccatagaactttcaaggcagtgaaaaattctgtaactgaacgt 28792  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| ||| |||||||| || |||||||| ||  ||||  |||| ||||| || ||    | ||||||||| ||||| |||||||| |    
T  28793 gaatcttgtttcaaactaaaaatttcacattgtaattcagagatacgaataaaatcaccttgggagaatctctctttgagttcattccatacatcaatgg 28892  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || ||||| |||||||| ||||| |||||||||    
T  28893 cattttccaggaaaacaatgctttgtgcaattgaa 28927  T

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Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 49642521 - 49642855
Alignment:
Q  25 gagaacgtaccaaatcaaaagagtcattgagaccggtgagaaaacgaatagaacgcgtgatctcatgttgatgcctcgcattgctcaatccagtagcaca 124  Q
    ||||||| |||||||||||||| ||||| |  || || ||||||||||||||||| |||||||||||||||||  | |||||  |||  |||||   |||    
T  49642521 gagaacgaaccaaatcaaaagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttagcattcatcacaccagtgataca 49642620  T
Q  125 tacacaacgatgtggacatgaacaaataggtacaggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgc 224  Q
     |  |||||||| ||||| | ||||| ||||   ||||||||||||||||| |||||||| |  || ||||| ||||| || ||||| | ||| |||||     
T  49642621 catgcaacgatgaggacaagcacaaacaggtgttggaagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgt 49642720  T
Q  225 gaatcttgcttcaaaccaaagatttcacactgcaattcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattg 324  Q
    |||||||| ||||||| ||| |||||||| || |||||||||||  ||||| |||| ||||  || ||    | ||||||||| ||||| |||||||| |    
T  49642721 gaatcttgtttcaaactaaaaatttcacattgtaattcagaaatacgaatgaaatcaccttaggagaatctttctttgagttcattccatacatcaatgg 49642820  T
Q  325 cgttatccagaaaaacaatactttgcgcaattgaa 359  Q
    | || | ||| |||||||| ||||| |||||||||    
T  49642821 catttttcaggaaaacaatgctttgtgcaattgaa 49642855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 51589799 - 51589715
Alignment:
Q  280 ctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttc 364  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51589799 ctccttgtgaaaaacgttctttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttc 51589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 26131986 - 26131853
Alignment:
Q  159 ggaagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgca 258  Q
    |||||||| ||||||||||||||||| ||||||||||| | ||| || || |||||||| |||||||||||||||||||| ||||||||||| || || |    
T  26131986 ggaagatatgcttcaagttcttcccatagaaccttcaatgtagtgaaaaactcagaaactgaacgcgaatcttgcttcaatccaaagatttcgcattgta 26131887  T
Q  259 attcagaaatctgaatgtaatctccttgtgaaaa 292  Q
    ||||||||||  |||||||||| ||||| |||||    
T  26131886 attcagaaatacgaatgtaatcaccttgagaaaa 26131853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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