View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164_low_14 (Length: 248)
Name: NF5164_low_14
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 29494908 - 29494666
Alignment:
| Q |
1 |
ttcctctgatttcaccatgtgaacaaatcggtattcatttaagttttttcctccacaactactaccgattgagtgtggtgttagttgcaccatccttcct |
100 |
Q |
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| T |
29494908 |
ttcctctgatttcaccatgtgaacaaatcggtatttatttaagtttttttctccacaactactaccggttgagtgtggtgttggttgcaccatccttcct |
29494809 |
T |
|
| Q |
101 |
tcaccctccgcctccgtcgccggtggtggaagtgagctactctcctgctagaatagagaagcatggtgatggatatgggataatgaaatttcttaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29494808 |
tcaccctccgcctccgtcgccggtggtggaagtgagctactctcctgctagaatagagaagcatggtgatggatatgggataatgaaatttcttaatttt |
29494709 |
T |
|
| Q |
201 |
cttctgattttctcccttttcgtacaaattactttcatctctc |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29494708 |
cttctgattttctcccttttcgtacaaattactttcatgtctc |
29494666 |
T |
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