View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164_low_19 (Length: 231)
Name: NF5164_low_19
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 49720879 - 49721014
Alignment:
| Q |
51 |
aaaaaagttgacattttaagtctttgaagtaagcaagagcttttcttatttgaggaggtcattgagtaaccacaacattaggttcaccggcaggtgcatt |
150 |
Q |
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| T |
49720879 |
aaaaatgttgacatttgaagtctttgaagtaagcaagagcttttcttatttgaggaggtcatcaggtaaccacaacatcaggttcaccggtaggtgtatt |
49720978 |
T |
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| Q |
151 |
aagtgctatagacgtacgtatgtgttagagtgaact |
186 |
Q |
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| T |
49720979 |
tagtgctatagacgtaggtatgtgttggagtgaact |
49721014 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 49720627 - 49720671
Alignment:
| Q |
9 |
acatcatcatataagaaatcattggcaacatcaagttgtttcaaa |
53 |
Q |
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| T |
49720627 |
acatcaccgtataagaaatcattggcaacatcaagttgcttcaaa |
49720671 |
T |
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