View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5164_low_2 (Length: 582)

Name: NF5164_low_2
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5164_low_2
NF5164_low_2
[»] chr7 (24 HSPs)
chr7 (298-571)||(6350621-6350898)
chr7 (19-153)||(6350380-6350514)
chr7 (22-167)||(33387490-33387637)
chr7 (29-159)||(7003524-7003653)
chr7 (29-159)||(7049395-7049524)
chr7 (22-98)||(13072043-13072119)
chr7 (22-118)||(21420055-21420151)
chr7 (22-141)||(32198872-32198991)
chr7 (91-155)||(36659070-36659134)
chr7 (82-158)||(44832729-44832805)
chr7 (110-158)||(49010640-49010688)
chr7 (75-142)||(23581250-23581317)
chr7 (75-157)||(23090231-23090313)
chr7 (76-158)||(28836988-28837070)
chr7 (22-130)||(8722525-8722633)
chr7 (100-159)||(8866941-8867000)
chr7 (75-149)||(31251965-31252039)
chr7 (65-111)||(48614137-48614183)
chr7 (75-124)||(553569-553618)
chr7 (20-97)||(8867640-8867717)
chr7 (77-158)||(33386831-33386911)
chr7 (20-97)||(33685745-33685822)
chr7 (29-125)||(32073529-32073625)
chr7 (111-159)||(33686461-33686509)
[»] chr2 (21 HSPs)
chr2 (379-484)||(35081986-35082093)
chr2 (508-567)||(35084185-35084244)
chr2 (22-142)||(21556283-21556403)
chr2 (57-140)||(18829074-18829157)
chr2 (75-158)||(37621905-37621988)
chr2 (53-159)||(15441489-15441595)
chr2 (22-124)||(18829830-18829932)
chr2 (22-167)||(17373669-17373814)
chr2 (99-159)||(7071742-7071802)
chr2 (91-159)||(17444236-17444303)
chr2 (91-159)||(26161903-26161970)
chr2 (26-97)||(26238130-26238201)
chr2 (82-141)||(26591296-26591355)
chr2 (117-159)||(12756065-12756107)
chr2 (22-159)||(15512385-15512522)
chr2 (72-158)||(30325429-30325521)
chr2 (52-125)||(40654140-40654213)
chr2 (91-159)||(771632-771700)
chr2 (91-159)||(6403004-6403071)
chr2 (91-159)||(18982443-18982510)
chr2 (91-159)||(41250833-41250900)
[»] chr5 (12 HSPs)
chr5 (22-159)||(23034862-23034998)
chr5 (22-159)||(30297107-30297242)
chr5 (91-159)||(15959146-15959214)
chr5 (81-156)||(8788726-8788801)
chr5 (83-141)||(20368293-20368351)
chr5 (22-158)||(8788018-8788156)
chr5 (100-159)||(12278065-12278124)
chr5 (83-142)||(20362932-20362991)
chr5 (91-159)||(10036806-10036873)
chr5 (91-159)||(26282518-26282585)
chr5 (91-159)||(36292821-36292888)
chr5 (91-159)||(39435596-39435663)
[»] chr4 (34 HSPs)
chr4 (20-142)||(20628655-20628777)
chr4 (22-158)||(20635493-20635629)
chr4 (22-144)||(2941386-2941508)
chr4 (22-144)||(3222232-3222354)
chr4 (44-142)||(5290651-5290749)
chr4 (81-143)||(33846480-33846542)
chr4 (29-159)||(26546456-26546588)
chr4 (91-159)||(13390648-13390716)
chr4 (29-125)||(31854155-31854250)
chr4 (100-159)||(28876524-28876583)
chr4 (75-125)||(13502487-13502537)
chr4 (22-159)||(9415797-9415932)
chr4 (91-159)||(34406484-34406551)
chr4 (91-159)||(44157522-44157590)
chr4 (22-97)||(3292805-3292880)
chr4 (100-159)||(30215956-30216015)
chr4 (100-159)||(33135654-33135713)
chr4 (102-161)||(56226192-56226251)
chr4 (100-158)||(42332983-42333041)
chr4 (105-159)||(50204302-50204356)
chr4 (22-118)||(15742705-15742799)
chr4 (22-115)||(29094332-29094425)
chr4 (20-97)||(42333685-42333762)
chr4 (22-71)||(56226267-56226316)
chr4 (91-159)||(1818554-1818621)
chr4 (22-94)||(9070467-9070538)
chr4 (91-159)||(13013088-13013155)
chr4 (91-159)||(25931609-25931676)
chr4 (91-159)||(26438479-26438546)
chr4 (91-159)||(26449622-26449690)
chr4 (91-159)||(36381549-36381616)
chr4 (91-159)||(43356804-43356871)
chr4 (91-159)||(47501673-47501740)
chr4 (22-98)||(48130161-48130237)
[»] chr8 (14 HSPs)
chr8 (22-158)||(33947257-33947393)
chr8 (91-159)||(3436131-3436199)
chr8 (29-159)||(9878118-9878247)
chr8 (82-141)||(15863523-15863582)
chr8 (110-159)||(32539693-32539742)
chr8 (22-115)||(33532980-33533073)
chr8 (369-409)||(6290214-6290254)
chr8 (22-158)||(33947628-33947763)
chr8 (59-158)||(40401350-40401449)
chr8 (22-159)||(29352261-29352395)
chr8 (91-159)||(24019591-24019658)
chr8 (91-159)||(28524098-28524165)
chr8 (34-118)||(33534788-33534872)
chr8 (91-159)||(39915414-39915481)
[»] chr3 (19 HSPs)
chr3 (369-440)||(11021744-11021815)
chr3 (77-141)||(19814987-19815052)
chr3 (76-168)||(10842491-10842583)
chr3 (22-149)||(5177104-5177231)
chr3 (26-157)||(38415649-38415783)
chr3 (101-159)||(5136191-5136249)
chr3 (100-158)||(11017480-11017538)
chr3 (44-133)||(8257706-8257795)
chr3 (22-137)||(219475-219590)
chr3 (22-156)||(16094283-16094418)
chr3 (75-125)||(218796-218846)
chr3 (91-157)||(27936081-27936147)
chr3 (110-159)||(29564382-29564431)
chr3 (100-141)||(35938141-35938182)
chr3 (75-155)||(485159-485239)
chr3 (91-159)||(19391046-19391113)
chr3 (91-159)||(22967644-22967711)
chr3 (91-159)||(34083322-34083389)
chr3 (91-159)||(39772690-39772757)
[»] chr1 (9 HSPs)
chr1 (43-167)||(17458081-17458204)
chr1 (91-159)||(17446191-17446259)
chr1 (91-159)||(41971457-41971525)
chr1 (91-158)||(15209490-15209557)
chr1 (91-157)||(3829883-3829949)
chr1 (22-141)||(17745041-17745162)
chr1 (23-138)||(9901855-9901968)
chr1 (22-144)||(3829166-3829291)
chr1 (23-69)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (22-149)||(18213-18340)
[»] chr6 (5 HSPs)
chr6 (53-168)||(16793782-16793897)
chr6 (22-157)||(23217804-23217939)
chr6 (44-122)||(28932958-28933036)
chr6 (22-97)||(28996913-28996988)
chr6 (91-159)||(399517-399584)
[»] scaffold0154 (1 HSPs)
scaffold0154 (91-159)||(32113-32181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (91-159)||(479657-479724)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 298 - 571
Target Start/End: Original strand, 6350621 - 6350898
Alignment:
Q  298 aagagggaaaacgatggagaaaatggaatttctttattaccaactctctctttttaacctttgttgtaaccgttaagaatggaagaagaagaaagattac 397  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6350621 aagagggaaaacgatggagaaaatggaatttctttattactaactctctctctttaacctctgttgtaaccgttaagaatggaagaagaagaaagattac 6350720  T
Q  398 ttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagttatgatagagtgcagttagtc 495  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350721 ttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgttatggcagttagagagagttatgatagagtgcagttagtc 6350820  T
Q  496 tatgatagctaa--gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat 571  Q
    |||| ||| |||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350821 tatggtaggtaaacgcttaagcattttaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat 6350898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 6350380 - 6350514
Alignment:
Q  19 cgattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350380 cgattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 6350479  T
Q  119 attatttatgaccctataatatacgtaaagtccaa 153  Q
    |||||||||||||||||||||||||||||||||||    
T  6350480 attatttatgaccctataatatacgtaaagtccaa 6350514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 33387637 - 33387490
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttat- 120  Q
    ||||||||  ||||||||  | ||||||||| ||||||| ||||||||  || |||||| ||||||||||||| ||| | |||||||||||||| || |     
T  33387637 ttaattgtcaaaattgaccttgtaatatacatgaagtctaaacaatgatcctataaaataaaaaacacatattataaccctgtaatttgagatttttttc 33387538  T
Q  121 -tatttatgaccctataatatacgtaaagtccaaaaaagcgaactaga 167  Q
      |||| ||||||| ||||||| | || |||||||| ||||| |||||    
T  33387537 ccatttttgaccctttaatatatgcaacgtccaaaagagcgacctaga 33387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 7003653 - 7003524
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 127  Q
    |||||||||||  | ||||||||  |||||||||| | |||| || |||  ||||| |||| ||||||| | ||||||||| || ||| |||||||||||    
T  7003653 ttgaaattgaccatgtaatatacgtgaagtctgaaaattgaccctataa--ttaaataacatatattctgaccatgtaattcgatatttttattatttat 7003556  T
Q  128 gaccctataatatacgtaaagtccaaaaaagc 159  Q
     ||||| |||||||||  ||||||||||||||    
T  7003555 aaccctgtaatatacgcgaagtccaaaaaagc 7003524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 7049524 - 7049395
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 127  Q
    |||||||||||  | ||||||||  |||||||||| | |||| || |||  ||||| |||| ||||||| | ||||||||| || ||| |||||||||||    
T  7049524 ttgaaattgaccatgtaatatacgtgaagtctgaaaattgaccctataa--ttaaataacatatattctgaccatgtaattcgatatttttattatttat 7049427  T
Q  128 gaccctataatatacgtaaagtccaaaaaagc 159  Q
     ||||| |||||||||  ||||||||||||||    
T  7049426 aaccctgtaatatacgcgaagtccaaaaaagc 7049395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 13072043 - 13072119
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaa 98  Q
    |||||| ||||||||||| || |||||||  ||||||||||| |||||| |  |||||| |||||||||||||||||    
T  13072043 ttaattattgaaattgaccctgtaatatatgcgaagtctgaaaaatgaccccgtaaaataaaaaacacatattctaa 13072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 21420055 - 21420151
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 118  Q
    ||||||||||||||||||  | ||||||||  |||||||||| ||||| ||| |||||  ||||||| | ||||||| | |||||||||| ||||||    
T  21420055 ttaattgttgaaattgaccttgtaatatacgtgaagtctgaaaaatgattctataaaaaaaaaaacatagattctaaccctgtaatttgatattctt 21420151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 32198872 - 32198991
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctt-taaaattaaaaacacatattctaaacatgtaatttgagattcttat 120  Q
    |||||| || ||||||||  | |||||||| |  |||||||| ||||| |||| ||||| |||||||||||||||||| | | ||||||||||||||| |    
T  32198872 ttaattatttaaattgaccttgtaatatacgcatagtctgaaaaatga-tcttgtaaaaataaaaacacatattctaaccctataatttgagattcttct 32198970  T
Q  121 tatttatgaccctataatata 141  Q
    ||||| || |||| |||||||    
T  32198971 tatttttggccctctaatata 32198991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 36659134 - 36659070
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaa 155  Q
    |||||| | |||||||||||||||| ||||||||||| ||||| |||||||||  ||||||||||    
T  36659134 tattctgaccatgtaatttgagatttttattatttataaccctgtaatatacgcgaagtccaaaa 36659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 44832805 - 44832729
Alignment:
Q  82 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    ||||||||||||| ||| | |||||||||||||||||||||||| ||||||| |||  ||  | |||||||||||||    
T  44832805 aaaaacacatattttaaccctgtaatttgagattcttattatttttgaccctgtaaattagttgaagtccaaaaaag 44832729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 49010688 - 49010640
Alignment:
Q  110 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  49010688 gagatttttattatttatgaccctgtaatatacgtgaagtccaaaaaag 49010640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 23581250 - 23581317
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 142  Q
    |||||||||||| ||||||||||| | |||||||||||| |||| ||| || | ||||||||||||||    
T  23581250 taaaattaaaaatacatattctaaccctgtaatttgagaatctttttagttttaaccctataatatac 23581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 23090313 - 23090231
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 157  Q
    |||||| ||||||||||||| ||| | |||||||| | ||| |||||||||  |||||| |||||||  ||||||||||||||    
T  23090313 taaaataaaaaacacatattataatcttgtaatttaatatttttattattttcgaccctttaatatagttaaagtccaaaaaa 23090231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 28836988 - 28837070
Alignment:
Q  76 aaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||| ||||||| || ||| ||| | ||| |||||| ||||||||||||||||||||| ||||||| || ||||||| |||||    
T  28836988 aaaaataaaaacgcaaattttaaccttgttatttgatattcttattatttatgaccctgtaatatatgtgaagtccagaaaag 28837070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 8722525 - 8722633
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| ||||||||| | || |||||||    ||||||||  ||||||| | |||||| ||||||| ||||| | | | ||||||| ||||||||||||    
T  8722525 ttaattattgaaattgtccctgtaatatatgtaaagtctgataaatgactttgtaaaataaaaaacatatattatgaccctgtaattcgagattcttatt 8722624  T
Q  122 atttatgac 130  Q
    |||||||||    
T  8722625 atttatgac 8722633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 8866941 - 8867000
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||| || ||| ||||||||||| ||| | |||||||||| ||||||||||||||    
T  8866941 catgtaattcgaaatttttattatttataaccttgtaatatacgtgaagtccaaaaaagc 8867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 31251965 - 31252039
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagt 149  Q
    |||||| ||||||||||||||||| ||| || ||||| ||||||||||| | | ||| | ||||||||| |||||    
T  31251965 taaaataaaaaacacatattctaaccatatattttgatattcttattatctttaaccttgtaatatacgcaaagt 31252039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 48614183 - 48614137
Alignment:
Q  65 aatgactctttaaaattaaaaacacatattctaaacatgtaatttga 111  Q
    ||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  48614183 aatgactctgtaaaaataaaaacacatattttaaatatgtaatttga 48614137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 553618 - 553569
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatt 124  Q
    |||||||||||||||||||||||  |||||||||||| ||| || |||||    
T  553618 taaaattaaaaacacatattctagtcatgtaatttgaaattattcttatt 553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 8867717 - 8867640
Alignment:
Q  20 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||||||||| |||||||| |||||||||||   | ||||||| |||||| ||| |||||  |||||| ||||||||    
T  8867717 gattaattgttcaaattgaccctataatataccttatgtctgaaaaatgacccttaaaaatacaaaacatatattcta 8867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 33386831 - 33386911
Alignment:
Q  77 aaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||| ||||||| ||||| ||| ||||||||||||||||||| || ||| ||||||| ||||||| |   ||||||||||||    
T  33386831 aaataaaaaacatatattttaatcatgtaatttgagattctttttgttt-tgaccctctaatatatgcgtagtccaaaaaag 33386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 33685745 - 33685822
Alignment:
Q  20 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||||||||| |||||||| || |||||||||  | ||||||| |||||| || ||||||  |||||| ||||||||    
T  33685745 gattaattgttcaaattgaccctgtaatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattcta 33685822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 32073625 - 32073529
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 125  Q
    |||||||||||  | |||||||  ||||||||||| |||||   | |||||| || | |||||||| ||| |||||||||||  |||||||||||||    
T  32073625 ttgaaattgaccttgtaatatatgcgaagtctgaaaaatgatcatgtaaaataaatagcacatattttaatcatgtaatttgcaattcttattattt 32073529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 33686509 - 33686461
Alignment:
Q  111 agattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||| ||||||||||| ||||| |||||||||| |||||| |||||||    
T  33686509 agatttttattatttataaccctgtaatatacgtgaagtcctaaaaagc 33686461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 379 - 484
Target Start/End: Original strand, 35081986 - 35082093
Alignment:
Q  379 gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagtta 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||||||  ||    
T  35081986 gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaacta 35082085  T
Q  477 tgatagag 484  Q
    ||||||||    
T  35082086 tgatagag 35082093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 508 - 567
Target Start/End: Original strand, 35084185 - 35084244
Alignment:
Q  508 gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctct 567  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  35084185 gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctattctct 35084244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 21556283 - 21556403
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| ||| ||||  | ||| |||||||| ||||||| ||||||  | |||||| ||| | ||||||| |||  |||||||||||||||||| |     
T  21556283 ttaattgtttaaactgaccatttaaaatacacgatgtctgaaaaatgaccttgtaaaataaaatatacatattataactatgtaatttgagattcttcta 21556382  T
Q  122 atttatgaccctataatatac 142  Q
    |||| ||||||||||||||||    
T  21556383 atttttgaccctataatatac 21556403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 18829074 - 18829157
Alignment:
Q  57 gtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatat 140  Q
    ||||||| |||||  || |||||| ||||| ||||||||||| |   |||||||||||||||||||||| ||||||||||||||    
T  18829074 gtctgaaaaatgatcctgtaaaataaaaaatacatattctaacctcataatttgagattcttattatttttgaccctataatat 18829157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 37621988 - 37621905
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||||| ||||| | ||||| ||| ||||||||||||||||||| ||| || ||||||||||||||||||   |||||||||||    
T  37621988 taaaataaaaaatagatattttaaccatgtaatttgagattcttcttacttttgaccctataatatacgtgtggtccaaaaaag 37621905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 15441489 - 15441595
Alignment:
Q  53 cgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtcca 152  Q
    ||||||||||| ||| || ||||||||| |||| || |||||||||   |||||||||| ||||||||||||| | ||| | |||||||  | |||||||    
T  15441489 cgaagtctgaaaaataaccctttaaaataaaaaccatatattctaactctgtaatttgatattcttattatttttcaccatgtaatatagttgaagtcca 15441588  T
Q  153 aaaaagc 159  Q
    |||||||    
T  15441589 aaaaagc 15441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 18829932 - 18829830
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| |||||||||||  | |||||||    ||||||||| ||||||  | |||||| |||| |||||||||||| | ||||||||||||||||||||    
T  18829932 ttaattattgaaattgaccatgtaatatatgtaaagtctgaaaaatgacattgtaaaataaaaagcacatattctaaccctgtaatttgagattcttatt 18829833  T
Q  122 att 124  Q
    |||    
T  18829832 att 18829830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 17373814 - 17373669
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| |||||||  || ||| |||| | | ||||||| ||||||  | |||||| ||||| | |||||||||   |||||||||||||||||  |    
T  17373814 ttaattgtttaaattgagcctgtaaaatacccaatgtctgaaaaatgaccatgtaaaataaaaaatagatattctaactctgtaatttgagattcttcgt 17373715  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagcgaactaga 167  Q
    |||| ||||| |||||||||||  | ||||||||||| || |||||    
T  17373714 atttttgaccttataatatacgcgaggtccaaaaaagtgatctaga 17373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 7071742 - 7071802
Alignment:
Q  99 acatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||| ||||||||| ||||||||||| ||||  |||||||||  ||||||||||||||    
T  7071742 acatgtagtttgagatttttattatttataacccactaatatacgcgaagtccaaaaaagc 7071802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 17444236 - 17444303
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||| ||||||||||||||    
T  17444236 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgtgaagtccaaaaaagc 17444303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 26161903 - 26161970
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  26161903 tattctgaccatgtaattcgagatttttattatttat-accctgtaatatacgcgaagtccaaaaaagc 26161970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 26238130 - 26238201
Alignment:
Q  26 ttgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||| |||||||||||||||||||||  | ||||||| |||||| || ||||||  |||||| ||||||||    
T  26238130 ttgttcaaattgactctataatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattcta 26238201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 26591296 - 26591355
Alignment:
Q  82 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 141  Q
    ||||| || |||||||| |||||||||| | |||||| |||||| |||||||||||||||    
T  26591296 aaaaatacttattctaaccatgtaatttcatattcttcttatttttgaccctataatata 26591355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 12756065 - 12756107
Alignment:
Q  117 ttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  12756065 ttattatttataaccctataatatacgcgaagtccaaaaaagc 12756107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 15512522 - 15512385
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| |||||||||||  |  |||||| | ||| |||||| |||||  ||  ||||| ||||||| |||||||||   |||||||||||||| |||||    
T  15512522 ttaattattgaaattgaccatgcaatatatatgaaatctgaaaaatgatgctgaaaaataaaaaacatatattctaactctgtaatttgagatttttatt 15512423  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||| |  | || |||||||  | ||||||||||||||    
T  15512422 atttttttctctgtaatatagttgaagtccaaaaaagc 15512385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 30325429 - 30325521
Alignment:
Q  72 ctttaaaattaaaaacacatattctaaacatgtaatttgag------attcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    ||||||||||| ||||||||||||||| | |||||||||||       ||||| |||||| |||| |||||||||||   |||||||||||||    
T  30325429 ctttaaaattataaacacatattctaatcttgtaatttgagtttttttttcttcttatttttgactctataatatacacgaagtccaaaaaag 30325521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 40654213 - 40654140
Alignment:
Q  52 acgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 125  Q
    |||||||||||| ||| ||||| |||| | |||| |||||||||||| | | |||||||||||  |||||||||    
T  40654213 acgaagtctgaaaaataactctgtaaactaaaaatcacatattctaaccctctaatttgagatgtttattattt 40654140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 771700 - 771632
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||| ||||| |||||| |||||||| || ||||| |||||||||  ||||||||||||||    
T  771700 tattctgaccatataattcgagatttttattattcataaccctgtaatatacgcgaagtccaaaaaagc 771632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 6403004 - 6403071
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  6403004 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 6403071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 18982510 - 18982443
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  18982510 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 18982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 41250833 - 41250900
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  41250833 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 41250900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 23034998 - 23034862
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| ||||||||||  || |||||||||||||||||||| ||||||||| |||||| ||||| ||||||| | | ||||||||| || ||| ||| |    
T  23034998 ttaattattgaaattgatcctgtaatatacacgaagtctgaaaaatgactctgtaaaat-aaaaatacatattatgaccatgtaattcgatatttttact 23034900  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23034899 atttatgaccctataatatacgtgaagtccaaaaaagc 23034862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 30297107 - 30297242
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| |||||||||||  | ||||||| ||||||||| || ||||||  | | |||| |||| |||||||||||| | ||||||| ||||||||||||    
T  30297107 ttaattattgaaattgaca-tgtaatataaacgaagtctcaa-aatgacgttgttaaataaaaatcacatattctaaccctgtaattcgagattcttatt 30297204  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||||| | | | |||||||||||||||||||||||    
T  30297205 atttatgatcatgtgatatacgtaaagtccaaaaaagc 30297242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 15959146 - 15959214
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| ||||||||||| |||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  15959146 tattctgaacatgtaattcgagatttttattatttataaccctataatatacgcgaagtccaaaaaagc 15959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 8788801 - 8788726
Alignment:
Q  81 taaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaa 156  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| | || ||||||||||  |||||||||||||    
T  8788801 taaaaacacatattttagccatgtaatttgagattcttattattttttactctataatatagttaaagtccaaaaa 8788726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 20368293 - 20368351
Alignment:
Q  83 aaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 141  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||| ||||| |||||||||    
T  20368293 aaaagacatattttaaacttgtaatttgagattcttcttatttttgaccatataatata 20368351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 8788018 - 8788156
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttat- 120  Q
    ||||||||| |||||||| || ||| |||  |||   ||||| ||| || || |||||| ||||||| |||||||||   |||||||||||||| || |     
T  8788018 ttaattgtttaaattgacactgtaaaatatgcgatacctgaaaaataaccctgtaaaataaaaaacaaatattctaactttgtaatttgagatttttttc 8788117  T
Q  121 -tatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
     ||||| ||||||||||||||||||   |||||||||||    
T  8788118 ttatttttgaccctataatatacgtgtggtccaaaaaag 8788156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 12278065 - 12278124
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||| | ||||||||||||||    
T  12278065 catgtaattcgaaatttttattatttataaccctgtaatatacatgaagtccaaaaaagc 12278124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 20362932 - 20362991
Alignment:
Q  83 aaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 142  Q
    |||| ||||||| ||| | ||||||||||||||||| |||||| ||||| ||||||||||    
T  20362932 aaaagacatattttaaccttgtaatttgagattcttcttatttttgaccatataatatac 20362991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 10036873 - 10036806
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  10036873 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 10036806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 26282518 - 26282585
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  26282518 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 26282585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 36292821 - 36292888
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  36292821 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 36292888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 39435663 - 39435596
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| ||| |||||| ||||||||||||||    
T  39435663 tattctgaccatgtaattcgagatttttattatttat-aacctgtaagatacgtgaagtccaaaaaagc 39435596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 20628655 - 20628777
Alignment:
Q  20 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctta 119  Q
    |||| ||||||||||||||| || ||||||||  |||||||||| ||||||| | |||||| |||||||||||||  || | |||||||||| |||||||    
T  20628655 gattgattgttgaaattgaccctgtaatatacgggaagtctgaaaaatgactatgtaaaataaaaaacacatattaaaaccttgtaatttgatattctta 20628754  T
Q  120 ttatttatgaccctataatatac 142  Q
    |||||| | ||||| ||||||||    
T  20628755 ttattttttaccctgtaatatac 20628777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 20635493 - 20635629
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| ||||||||  |  |||||| | ||| ||| || |||||  || |||||| ||||||||||||| ||| | |||||||||| ||||| |||    
T  20635493 ttaattgtttaaattgaccttgcaatatatatgaaatctcaaaaatgaacctgtaaaataaaaaacacatattttaaccttgtaatttgatattctcatt 20635592  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||| | |||||||||| ||| | |||||||||||||    
T  20635593 attttttaccctataatgtacattaagtccaaaaaag 20635629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 2941508 - 2941386
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||||||||||||||   | |||||||  ||  ||||||| |||||| || ||||| |||||||||||||| |||   |||||||||| ||||||  |    
T  2941508 ttaattgttgaaattgatcttgtaatataggcgtggtctgaaaaatgaccctgtaaaaataaaaacacatattttaactctgtaatttgatattctttct 2941409  T
Q  122 atttatgaccctataatatacgt 144  Q
    |||| ||||||||||||| ||||    
T  2941408 atttttgaccctataatacacgt 2941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 3222354 - 3222232
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| |||||||| |  ||| |||||| | || |||| ||| |  || |||||| ||||| |||||||||||   ||| ||||||||||||| ||    
T  3222354 ttaattgtttaaattgaccccgtaaaatacacaatgtttgaaaaataatcctgtaaaatgaaaaatacatattctaactctgtcatttgagattcttctt 3222255  T
Q  122 atttatgaccctataatatacgt 144  Q
    |||| ||||||||||||||||||    
T  3222254 atttttgaccctataatatacgt 3222232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 5290651 - 5290749
Alignment:
Q  44 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 142  Q
    ||||| ||| ||||||| || ||| || || ||||| |||||| ||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||||||    
T  5290651 taatacacatgaagtctaaaaaataacgctataaaaataaaaagacatattttaaacttgtaatttgagattcttcttattttttaccatataatatac 5290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 33846542 - 33846480
Alignment:
Q  81 taaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacg 143  Q
    |||||||||||||| ||| |||||||||||| |||||| |||||| ||||||| |||||||||    
T  33846542 taaaaacacatattataaccatgtaatttgatattcttcttatttttgaccctttaatatacg 33846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 26546456 - 26546588
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaaca--catattctaaacatgtaatttgagattcttattattta 126  Q
    ||||||||||  || |||||||  ||||||||||| | | ||||| |||||| ||||| |  || |||||||   ||||||||||||||||||||||||     
T  26546456 ttgaaattgatcctgtaatatatgcgaagtctgaaaattaactctgtaaaataaaaaaaaaacacattctaactctgtaatttgagattcttattatttt 26546555  T
Q  127 tgaccctataatatacgtaaagtccaaaaaagc 159  Q
     |||||| |||||||  | ||||||||||||||    
T  26546556 ggaccctgtaatatagttgaagtccaaaaaagc 26546588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 13390648 - 13390716
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  13390648 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 13390716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 31854250 - 31854155
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 125  Q
    ||||||||||| || |||||||   |||||||||| |||||| || |||||| ||||||| ||||| ||| | |||||||||| |||||||||||||    
T  31854250 ttgaaattgac-ctgtaatatatgtgaagtctgaaaaatgaccctgtaaaataaaaaacatatattataatcctgtaatttgatattcttattattt 31854155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 28876524 - 28876583
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  28876524 catgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 28876583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 13502537 - 13502487
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 125  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  13502537 taaaattaaaaacatatattttaaacatataatttgagattcttcttattt 13502487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 9415932 - 9415797
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| ||||||||||| || |||||||  ||||||||||| ||| || |  |||| | || |||||||||| ||| | |||||||||||||||| |||    
T  9415932 ttaattattgaaattgaccctgtaatatatgcgaagtctgaaaaat-acccactaaa-taaataacacatattataaccctgtaatttgagattctgatt 9415835  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
     ||| ||||||| || ||||  | ||||||||||||||    
T  9415834 ctttttgaccctgtattatagttgaagtccaaaaaagc 9415797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 34406484 - 34406551
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| ||||||||| |||||||||||||||    
T  34406484 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcaaagtccaaaaaagc 34406551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 44157590 - 44157522
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | |||| |||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  44157590 tattctgaccatgcaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 44157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 3292880 - 3292805
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||||||| ||||||||||| ||||||||   | ||||||| |||||||||| |||||  |||||| ||||||||    
T  3292880 ttaattgttcaaattgactctgtaatataccttatgtctgaaaaatgactcttaaaaatacaaaacatatattcta 3292805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 30215956 - 30216015
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  30215956 catgtaattcgaaatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 30216015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 33135654 - 33135713
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    ||||||||| |||||| ||||||||||| ||| | |||||||||  ||||||||||||||    
T  33135654 catgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaagc 33135713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 56226251 - 56226192
Alignment:
Q  102 tgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagcga 161  Q
    |||||||||| |||||||||||||  ||||  ||||||||||  ||||||||||||||||    
T  56226251 tgtaatttgatattcttattatttgagaccaaataatatacgagaagtccaaaaaagcga 56226192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 42332983 - 42333041
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||||  |||||||||||||    
T  42332983 catgtaattcgaaatttttattatttataaccctgtaatatacgcgaagtccaaaaaag 42333041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 50204302 - 50204356
Alignment:
Q  105 aatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  50204302 aattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 50204356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 15742799 - 15742705
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 118  Q
    ||||||||| ||||||| ||| |||||||| |  |||||||| | ||||  | ||||| |||||||||||||||||| | |||  ||||||||||||    
T  15742799 ttaattgttcaaattgattctgtaatatacgcatagtctgaaaactgaccttgtaaaaataaaaacacatattctaaccctgt--tttgagattctt 15742705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 29094332 - 29094425
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagatt 115  Q
    ||||||||| ||| |||| || ||| |||| | | ||||||| ||| || || |||||| ||||| ||||||||||| | ||||||||||||||    
T  29094332 ttaattgtttaaaatgaccctgtaaaatacgcaatgtctgaaaaataaccctgtaaaataaaaaatacatattctaaccctgtaatttgagatt 29094425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 42333762 - 42333685
Alignment:
Q  20 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||||||||| ||||||||||| ||||||||   | ||||||| |||||| ||| |||||  |||||| ||||||||    
T  42333762 gattaattgttcaaattgactctgtaatataccttatgtctgaaaaatgacccttaaaaatacaaaacatatattcta 42333685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 56226316 - 56226267
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgact 71  Q
    ||||||||||||||| ||| | ||||||||||||||||| || |||||||    
T  56226316 ttaattgttgaaattaactttgtaatatacacgaagtctaaaaaatgact 56226267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 1818621 - 1818554
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  1818621 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgagaagtccaaaaaagc 1818554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 9070467 - 9070538
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatatt 94  Q
    |||| |||| ||||||||  | |||||||| ||||||||||| |||||| ||||||||  |||||||||||||    
T  9070467 ttaactgttcaaattgaccatgtaatatacgcgaagtctgaaaaatgac-ctttaaaaagaaaaacacatatt 9070538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 13013155 - 13013088
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  13013155 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 13013088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 25931676 - 25931609
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  25931676 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 25931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 26438479 - 26438546
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  26438479 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 26438546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 26449690 - 26449622
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  |||| |||||||||    
T  26449690 tattctgaccatgtaattcgagatttttattatttataatcctgtaatatacgcgaagttcaaaaaagc 26449622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 36381549 - 36381616
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  36381549 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 36381616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 43356871 - 43356804
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  43356871 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 43356804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 47501740 - 47501673
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  47501740 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 47501673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 48130161 - 48130237
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaa 98  Q
    ||||||||| ||||||||  |||||||||||  | ||||||| |||||| || ||||||  |||||| |||||||||    
T  48130161 ttaattgttcaaattgaccatataatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattctaa 48130237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 33947257 - 33947393
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| ||||||||  | |||||||  ||||||||||| ||||||||| || || ||||| ||| |||| ||| | |||||||||||||||||  |    
T  33947257 ttaattgttcaaattgaccatgtaatataggcgaagtctgaaaaatgactctgtacaaataaaagcacgtattttaaccttgtaatttgagattcttcat 33947356  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    || | ||||||||||||||| || |||||||||||||    
T  33947357 atgtttgaccctataatatatgtgaagtccaaaaaag 33947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 3436199 - 3436131
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||| ||||||||||||| |||||| ||||||||||| ||| | ||||||||| |||||||||||||||    
T  3436199 tattttaaacatgtaattcgagatttttattatttataaccttgtaatatacgcaaagtccaaaaaagc 3436131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 9878247 - 9878118
Alignment:
Q  29 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 127  Q
    |||||||||||  | ||||||||| |||||||||| | |||| || |||  ||||| ||||  |||||| | ||||||||| |||||| |||||||||||    
T  9878247 ttgaaattgaccatgtaatatacatgaagtctgaaaattgaccctgtaa--ttaaataacatgtattctgaccatgtaattcgagatttttattatttat 9878150  T
Q  128 gaccctataatatacgtaaagtccaaaaaagc 159  Q
     ||| | |||||||||  ||||||||||||||    
T  9878149 aaccttgtaatatacgcgaagtccaaaaaagc 9878118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 15863582 - 15863523
Alignment:
Q  82 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 141  Q
    ||||| |||||||| |||| ||||||||||||| ||| |||||| |||||||||||||||    
T  15863582 aaaaatacatattccaaacttgtaatttgagatacttcttatttttgaccctataatata 15863523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 32539693 - 32539742
Alignment:
Q  110 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  32539693 gagattcttattatttatcaccctgtaaaatacgtgaagtccaaaaaagc 32539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 33533073 - 33532980
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagatt 115  Q
    ||||||||| |||||||  ||||||| |||||||||||| || ||||||| | ||||| ||||| || | ||| ||| | ||||||||||||||    
T  33533073 ttaattgttcaaattgatcctataatgtacacgaagtctaaaaaatgactatgtaaaaataaaatcataaattataaccttgtaatttgagatt 33532980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 6290254 - 6290214
Alignment:
Q  369 gttaagaatggaagaagaagaaagattacttgagaagcaag 409  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  6290254 gttaagaatggaagaagaaggaagattacttgaggagcaag 6290214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 33947763 - 33947628
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| || ||||||||  | ||||||||   ||||||||| ||||||  | ||||| |||||||| ||||| ||| | |||||||||| |||| | ||    
T  33947763 ttaattattcaaattgacaatgtaatatacgtaaagtctgaa-aatgaccatgtaaaaataaaaacatatattttaaccctgtaatttgaaattcatctt 33947665  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||| ||||||| |||| ||||  |||||||||||||    
T  33947664 atttttgaccctctaatgtacgctaagtccaaaaaag 33947628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 40401449 - 40401350
Alignment:
Q  59 ctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    ||||| |||||| ||| ||||| || ||| |||||||||| | ||||| |||| |||||| |||||| | ||||||||||||| |   ||||||||||||    
T  40401449 ctgaaaaatgacacttgaaaataaataacgcatattctaatcttgtaaattgatattcttcttatttttaaccctataatatatgcgtagtccaaaaaag 40401350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 29352395 - 29352261
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| |||||||||||||| |||||||  ||   |||||| |||||| | | ||||| |||||||||||| |||| | |||||||||||| | |||||    
T  29352395 ttaattattgaaattgactctgtaatatatgcgc--tctgaaaaatgacccgt-aaaataaaaaacacatatcctaaccctgtaatttgagacttttatt 29352299  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||| | | ||| |||||||  | |||| |||||||||    
T  29352298 attttttatcctgtaatatagttgaagtacaaaaaagc 29352261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 24019591 - 24019658
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  24019591 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 24019658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 28524165 - 28524098
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  28524165 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 28524098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 33534872 - 33534788
Alignment:
Q  34 attgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 118  Q
    |||||| |||||||||||||||||||| || ||||||| | ||||| |||||  ||| ||| |||   | |||||||||||||||    
T  33534872 attgaccctataatatacacgaagtctaaataatgactatgtaaaaataaaataacaaattgtaactttataatttgagattctt 33534788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 39915481 - 39915414
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  39915481 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 39915414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 369 - 440
Target Start/End: Complemental strand, 11021815 - 11021744
Alignment:
Q  369 gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac 440  Q
    |||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||  ||||||||||    
T  11021815 gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac 11021744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 19815052 - 19814987
Alignment:
Q  77 aaattaaaaac-acatattctaaacatgtaatttgagattcttattatttatgaccctataatata 141  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  19815052 aaattaaaaaccacatattctaaccatgtaatttgagattcttgttatttttgaccctataatata 19814987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 10842583 - 10842491
Alignment:
Q  76 aaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagcgaactagat 168  Q
    |||| |||||||||||||||||| |||||||||||| ||||||  ||||||||||||| ||||||| || | ||||| ||| |||| ||||||    
T  10842583 aaaaataaaaacacatattctaaccatgtaatttgatattcttcctatttatgaccctttaatatatgtgatgtccagaaaggcgatctagat 10842491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 5177104 - 5177231
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| ||||||||  | ||||| ||| |||||||||| ||||| ||| |||||| |||||||||||||  |  |||||||||||||||| || |     
T  5177104 ttaattgttcaaattgaccatgtaataaacatgaagtctgaaaaatgaatctgtaaaataaaaaacacatatttcacccatgtaatttgagatttttcta 5177203  T
Q  122 atttatgaccctataatatacgtaaagt 149  Q
    |||| | ||| | |||||||||| ||||    
T  5177204 attttttaccatttaatatacgtgaagt 5177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 38415783 - 38415649
Alignment:
Q  26 ttgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaa--cacatattctaaacatgtaatttgagattcttatta- 122  Q
    ||||| |||||||| || ||||||||| || ||||||| ||||||  | |||||| |||||  |||||||| ||| | ||||||||||||||||| |||     
T  38415783 ttgttcaaattgacgctgtaatatacatgatgtctgaaaaatgacattgtaaaataaaaaaaacacatattttaaccctgtaatttgagattcttcttat 38415684  T
Q  123 tttatgaccctataatatacgtaaagtccaaaaaa 157  Q
    ||| | |||||||||||||||   |||||||||||    
T  38415683 ttttttaccctataatatacgcgtagtccaaaaaa 38415649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 5136249 - 5136191
Alignment:
Q  101 atgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||||| |||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  5136249 atgtaattcgagatttttattatttataaccctataatatacgcgaagtccaaaaaagc 5136191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 11017480 - 11017538
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    ||||||||| || ||| ||||||||||| |||||||||||||||| |||||||||||||    
T  11017480 catgtaattcgaaatttttattatttataaccctataatatacgtgaagtccaaaaaag 11017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 8257795 - 8257706
Alignment:
Q  44 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccct 133  Q
    |||||| | |||||| | || |||||| || |||||| ||||||||||||| | | |||||||||  |||||||||||||||||||||||    
T  8257795 taatattcgcgaagtttaaaaaatgaccctgtaaaataaaaaacacatattttgaccatgtaattcaagattcttattatttatgaccct 8257706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 219590 - 219475
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| ||||||||||| ||| ||||  || ||||||| ||||||  | |||||| ||||| | ||||| ||| | || ||||||| |||||| ||    
T  219590 ttaattgtttaaattgactctgtaaaatacgtgatgtctgaaaaatgacattgtaaaataaaaaatagatattttaaccttgcaatttgaaattcttctt 219491  T
Q  122 atttatgaccctataa 137  Q
    |||| |||| ||||||    
T  219490 atttttgactctataa 219475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 16094283 - 16094418
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaac-acatattctaaacatgtaatttgagattcttat 120  Q
    |||||| ||||||||||| |  |||||||  ||||||||||| | |||| || |||||| |||||  ||||||| ||| | ||||||||||||| |||||    
T  16094283 ttaattattgaaattgacccagtaatatatgcgaagtctgaaaattgaccctgtaaaataaaaaaatacatattataaccctgtaatttgagatccttat 16094382  T
Q  121 tatttatgaccctataatatacgtaaagtccaaaaa 156  Q
     |||| |  |||| |||||||  | |||||||||||    
T  16094383 aattttttgccctgtaatatagttgaagtccaaaaa 16094418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 218796 - 218846
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 125  Q
    |||||| ||||||||||||| ||| | ||||||||| ||||||||||||||    
T  218796 taaaataaaaaacacatattataaccctgtaatttgggattcttattattt 218846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 27936147 - 27936081
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 157  Q
    |||||| | ||||| |||||||||  ||||||||||| ||||| |||||||||  ||||||||||||    
T  27936147 tattctgaccatgtgatttgagatatttattatttataaccctgtaatatacgcgaagtccaaaaaa 27936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 29564382 - 29564431
Alignment:
Q  110 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| ||||||||||||||| | | |||||||| ||||||||||||||    
T  29564382 gagattattattatttatgaccatgtcatatacgtgaagtccaaaaaagc 29564431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 35938182 - 35938141
Alignment:
Q  100 catgtaatttgagattcttattatttatgaccctataatata 141  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  35938182 catgtaatttaagattcttattatttttgaccccataatata 35938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 485159 - 485239
Alignment:
Q  75 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaa 155  Q
    ||||| |||| ||| |||||||| |  |||||||||||||||||  ||||| | ||||| |||||||||| | ||||||||    
T  485159 taaaaataaagacatatattctacatctgtaatttgagattctttctattttttaccctctaatatacgtgatgtccaaaa 485239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 19391113 - 19391046
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  19391113 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 19391046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 22967644 - 22967711
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  22967644 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 22967711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 34083322 - 34083389
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  34083322 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgagaagtccaaaaaagc 34083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 39772757 - 39772690
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  39772757 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 39772690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 17458204 - 17458081
Alignment:
Q  43 ataatatacacgaagtctgaacaatgactctt-taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 141  Q
    |||||||||||  |||||||| ||||| |||| | ||| |||||||||||||||||  | ||||||||||||||||| |||||| |||| ||||||||||    
T  17458204 ataatatacacttagtctgaaaaatga-tcttgttaaaataaaaacacatattctactc-tgtaatttgagattcttcttatttttgacgctataatata 17458107  T
Q  142 cgtaaagtccaaaaaagcgaactaga 167  Q
     |  ||||||| ||||| || |||||    
T  17458106 tgcgaagtccataaaagtgacctaga 17458081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 17446259 - 17446191
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  17446259 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 17446191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 41971457 - 41971525
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| ||||||||| |||||||| |||||||||||  |||| |||||||||  ||||||||||||||    
T  41971457 tattctgaacatgtaacttgagatttttattatttatagccctgtaatatacgcgaagtccaaaaaagc 41971525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 15209490 - 15209557
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 158  Q
    |||||| ||||||||||| |||||| ||||||||||| ||| | |||||||||  |||||||||||||    
T  15209490 tattctgaacatgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaag 15209557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 3829949 - 3829883
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 157  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||    
T  3829949 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaa 3829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 17745162 - 17745041
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa--aacacatattctaaacatgtaatttgagattctta 119  Q
    |||||| |||| ||||||  | |||||||  ||||||||||| |||||  || |||||| |||  || ||||||||||| |||| ||||||||||| |||    
T  17745162 ttaattattgacattgaccatgtaatatattcgaagtctgaaaaatgaacctgtaaaataaaataaaaacatattctaaccatgcaatttgagattttta 17745063  T
Q  120 ttatttatgaccctataatata 141  Q
    |||||| ||||| | |||||||    
T  17745062 ttatttttgaccgtgtaatata 17745041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 9901968 - 9901855
Alignment:
Q  23 taattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatta 122  Q
    |||||||| ||||| ||||| ||||| || ||| || |||| ||| |  || |||||| ||||||||||  ||||| |||||||||| | |||||| |||    
T  9901968 taattgttcaaattaactctgtaatacacgcgatgtttgaaaaataatcctataaaataaaaaacacat--tctaaccatgtaattttatattcttctta 9901871  T
Q  123 tttatgaccctataat 138  Q
    ||| ||||||||||||    
T  9901870 tttttgaccctataat 9901855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 3829166 - 3829291
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    ||||||||| |||||||| || |||||||||  | ||||||| |||||| || ||||||  |||||| |||||||||   ||||| ||||  ||||| ||    
T  3829166 ttaattgttcaaattgaccctgtaatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattctaactttgtaacttgaatttcttctt 3829265  T
Q  122 atttatgacc---ctataatatacgt 144  Q
    |||| |||||   |||||||||||||    
T  3829266 atttttgaccaccctataatatacgt 3829291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 33658941 - 33658895
Alignment:
Q  23 taattgttgaaattgactctataatatacacgaagtctgaacaatga 69  Q
    |||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  33658941 taatcgttcaaattgactctataatatacacgaagtcagaaaaatga 33658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 18340 - 18213
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| ||||||||||  || |||||||  |||||| |||  |||||| |  ||||||  |||| ||||||| ||| | ||||| || |||||||||||    
T  18340 ttaattattgaaattgatcctgtaatataagcgaagtatgacaaatgacccagtaaaatataaaaaacatattataatcctgtaagttaagattcttatt 18241  T
Q  122 atttatgaccctataatatacgtaaagt 149  Q
    |||||||||||| |||||| ||| ||||    
T  18240 atttatgaccctgtaatattcgtgaagt 18213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 16793782 - 16793897
Alignment:
Q  53 cgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtcca 152  Q
    ||||||||||| ||| ||||| |||||| |||| |||||||||||||  | ||||| |||| | ||||||||| | ||| | ||||||||  ||||||||    
T  16793782 cgaagtctgaaaaattactctgtaaaataaaaagcacatattctaaatctataattcgagagttttattattttttaccttgtaatatacacaaagtcca 16793881  T
Q  153 aaaaagcgaactagat 168  Q
     |||| ||| ||||||    
T  16793882 gaaaaacgacctagat 16793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 23217939 - 23217804
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 121  Q
    |||||| ||||||||||| || |||||||   || ||||||| ||||||    ||||||  |||||||||||||||| | ||||| |  | |||||||||    
T  23217939 ttaattattgaaattgaccctgtaatataagtgatgtctgaaaaatgacctagtaaaatataaaacacatattctaaccctgtaactcaatattcttatt 23217840  T
Q  122 atttatgaccctataatatacgtaaagtccaaaaaa 157  Q
    |||||||||  | |||||| ||| ||||||||||||    
T  23217839 atttatgactttgtaatattcgtgaagtccaaaaaa 23217804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 28933036 - 28932958
Alignment:
Q  44 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatta 122  Q
    |||||||  ||||||||||| |||||  || |||||| ||||||||||||| ||| | |||||||||| ||||||||||    
T  28933036 taatatatgcgaagtctgaaaaatgaacctgtaaaataaaaaacacatattttaaccctgtaatttgaaattcttatta 28932958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 28996913 - 28996988
Alignment:
Q  22 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 97  Q
    ||||||||| ||||||||||| ||||||||   | ||||||| |||||||||| |||||  |||||| ||||||||    
T  28996913 ttaattgttcaaattgactctgtaatataccttatgtctgaaaaatgactcttaaaaatacaaaacatatattcta 28996988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 399584 - 399517
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  399584 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 399517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 32181 - 32113
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| ||| | |||||||||  ||||||||||||||    
T  32181 tattctgaccatgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaagc 32113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 479657 - 479724
Alignment:
Q  91 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 159  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||  ||||||||||||||    
T  479657 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcgaagtccaaaaaagc 479724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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