View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164_low_3 (Length: 571)
Name: NF5164_low_3
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 43868405 - 43868789
Alignment:
| Q |
1 |
acaagaaagaagtctcccagtctcagttacacatgtttgatttatttaattaatagattaataaaatattggtctttgggagtaaatggtctgtgtaact |
100 |
Q |
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| T |
43868405 |
acaagaaagaagtctcccagtctcagttacacatgtttgatttatttaattaatagattaataaaatattggtctttgggagtaaatggtctgtgtaact |
43868504 |
T |
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| Q |
101 |
acatgagggaacatttttgaaaaacgttattaaggtggttttaagtaata--aaccactgctattaaatttttattgtgttattaaaattaaccgataaa |
198 |
Q |
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| T |
43868505 |
acatgagggaacagttctgaaaaacgttattaaggtggttttaagtaatattaaccactgctattaaatttttattgtgttattaaaattaaccgataaa |
43868604 |
T |
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| Q |
199 |
caaccataacaatgcagcaaatattgatggtgaagagcaaaactaaatataaagtttaaggtaaggcctacattatcttctcatgatttggagtaaattt |
298 |
Q |
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| T |
43868605 |
caaccataacaatgcagcaaatattgatggtgaagagcaaaactaaatataaagtttaaggtaaggcctacattatcttctcatgatttggagtaaattt |
43868704 |
T |
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| Q |
299 |
gtctccgatgacttgaaccaattaaactgtagaatatgaagtcaatcctcggagtcgaacaaatgagtcaattttagttctaagg |
383 |
Q |
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| T |
43868705 |
gtctccgatgacatgaaccacttaaagtgtagaatatgaagtcaatcctcggagtcgaacaaatgagtgaattttagttctaagg |
43868789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 43868852 - 43868926
Alignment:
| Q |
446 |
cattgtatgatttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattct |
520 |
Q |
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| T |
43868852 |
cattgtatggtttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattct |
43868926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 495 - 561
Target Start/End: Original strand, 43868928 - 43868994
Alignment:
| Q |
495 |
tttatccttagatcaactatcattctccttcattcaagaacatgacctccaaacacacccctttcat |
561 |
Q |
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| T |
43868928 |
tttatccttagatcaactatcattctccttcattcaagaacatgacctccaaacacacccctttcat |
43868994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 534
Target Start/End: Complemental strand, 43869898 - 43869821
Alignment:
| Q |
457 |
ttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattctccttcattcaagaa |
534 |
Q |
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| T |
43869898 |
ttatatcaattaaaatttaaaatcaaagtttcatcatctttatccttcgatcaatcaacattctccttcattaaagaa |
43869821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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