View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164_low_4 (Length: 474)
Name: NF5164_low_4
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 3446757 - 3447207
Alignment:
| Q |
8 |
cgaagaaaatgtaaaaaatattctctcaatttcgatggattggtttaacttctttnnnnnnnttatgagtaatctgaaaagaccgagctactactcgagg |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3446757 |
cgaataaaatgtaaaaaatattctctcaatttcgatggattggtttaacttctttaaaaaaattatgagtaatctgaaaagaccgagctactactcgagg |
3446856 |
T |
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| Q |
108 |
agccaaaaagttaacgagtcaccaataaaaagacaaccgatgtcaaattacctcatgaagccaacgagaatcactaaaagagcgaaatcaaatagtaaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3446857 |
agccaaaaagttaacgagtcaccaataaaaagacaaccgatgtcaaattacctcatgaagccaacgagaatcactaaaagagcgaaatcaaatagcaaga |
3446956 |
T |
|
| Q |
208 |
ggattaaaagctcatcactgcgtccaactctcctgactaggagtagttggcgttaaagctcactcaaataaagagacaaataagaaagactccccgaagg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3446957 |
ggattaaaagctcatcactgcgtccaactctcctgactaggagtagttggcgttaaagctcactcaaataaagagacaaataagaaagactccccgaagg |
3447056 |
T |
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| Q |
308 |
gatcgagtgcccgtaagactctccccagggatcaaacatcgataagactcttccaaactgccgattgaacacaagaaatcggaaagattctcccaaagaa |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447057 |
gatcgagtgcccgtaagactctcccaagggatcaaacatcgataagactcttccaaactgccgattgaacacaagaaatcggaaagattctcccaaagaa |
3447156 |
T |
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| Q |
408 |
tcgagcgctaataagactcccaggggatcaagcacaataaatcaaaaagat |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447157 |
tcgagcgctaataagactcccaggggatcaagcacaataaatcaaaaagat |
3447207 |
T |
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