View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5164_low_5 (Length: 384)

Name: NF5164_low_5
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5164_low_5
NF5164_low_5
[»] chr4 (3 HSPs)
chr4 (174-365)||(5776849-5777040)
chr4 (50-98)||(45994533-45994581)
chr4 (50-98)||(31307148-31307196)
[»] chr1 (4 HSPs)
chr1 (17-98)||(18428223-18428304)
chr1 (95-153)||(18427915-18427972)
chr1 (94-123)||(18404121-18404150)
chr1 (96-133)||(18427973-18428010)
[»] chr8 (3 HSPs)
chr8 (50-100)||(13468825-13468875)
chr8 (50-98)||(2743944-2743992)
chr8 (50-98)||(36994582-36994630)
[»] scaffold0182 (1 HSPs)
scaffold0182 (50-98)||(26342-26390)
[»] chr7 (3 HSPs)
chr7 (50-98)||(8839363-8839411)
chr7 (50-98)||(29059816-29059864)
chr7 (50-98)||(31492114-31492162)
[»] chr2 (4 HSPs)
chr2 (50-98)||(993765-993813)
chr2 (50-98)||(5394408-5394456)
chr2 (50-98)||(18105444-18105492)
chr2 (50-98)||(44732655-44732703)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 174 - 365
Target Start/End: Complemental strand, 5777040 - 5776849
Alignment:
Q  174 gtaggatttccagagatagatttaaatcaaaattttctcataaccaatatcgacataatactgataagaatcacaaaggaagttcttgtgattatctctt 273  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  5777040 gtaggattacctgagatagatttaaatcaaaattttctcataaccaatatcgacatgatactgataagaatcacaaaggaagttcttgtgattatctttt 5776941  T
Q  274 aaagcataagctttcaatcatcagcaatgcacaagagatattgaggttaggtaagtcatctagtttgatctataagataaagagttggaagt 365  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5776940 aaagcataagctttcaatcatcagcaatgcacaagagacattgaggttaggtaagtcatctagtttgatctataagataaagagttggaagt 5776849  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 45994533 - 45994581
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| |||||||||||||||||| |||||| ||||    
T  45994533 ctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatg 45994581  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 31307196 - 31307148
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  31307196 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 31307148  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 18428304 - 18428223
Alignment:
Q  17 atttatttagggacgaagtattgattgtaaacactcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  18428304 atttatttagggacgaagtattgattgtaaacactcttgtagcttaaccaaggttctggattcgaatccaaccttgggcatg 18428223  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 18427972 - 18427915
Alignment:
Q  95 catgtatttcaattaatttggaccaatcaaatttcaaggttttttcttcttcttcagtt 153  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  18427972 catgtatttcaattaatttggaccaatcacatttcaaggtttttt-ttcttcttcagtt 18427915  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 18404150 - 18404121
Alignment:
Q  94 acatgtatttcaattaatttggaccaatca 123  Q
    ||||||||||||||||||||||||||||||    
T  18404150 acatgtatttcaattaatttggaccaatca 18404121  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 18428010 - 18427973
Alignment:
Q  96 atgtatttcaattaatttggaccaatcaaatttcaagg 133  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  18428010 atgtatttcaattaatttggaccaatcacttttcaagg 18427973  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 13468875 - 13468825
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatgta 100  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||||    
T  13468875 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgta 13468825  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 2743944 - 2743992
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  2743944 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 2743992  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 36994630 - 36994582
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| ||| |||||||| ||||||| |||||||||| |||||||||||    
T  36994630 ctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatg 36994582  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 26342 - 26390
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  26342 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 26390  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 8839411 - 8839363
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  8839411 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 8839363  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 29059816 - 29059864
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  29059816 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 29059864  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31492114 - 31492162
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  31492114 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 31492162  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 993765 - 993813
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| ||||||| ||||||||| ||||    
T  993765 ctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatg 993813  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 5394408 - 5394456
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  5394408 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 5394456  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 18105492 - 18105444
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  18105492 ctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatg 18105444  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 44732703 - 44732655
Alignment:
Q  50 ctcttgtagcttaaccaaagtcctggattcgaatccaaccttggacatg 98  Q
    ||||| |||||||||||| ||||||| |||||||||| |||||| ||||    
T  44732703 ctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatg 44732655  T

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