View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5164_low_9 (Length: 337)
Name: NF5164_low_9
Description: NF5164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5164_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 6917634 - 6917927
Alignment:
| Q |
11 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917634 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
6917733 |
T |
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| Q |
111 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917734 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaaatggtctgattctgttgcaggttctcaggttgaaatctaggcaaat |
6917833 |
T |
|
| Q |
211 |
cctgcaacatattttaccaacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
304 |
Q |
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| T |
6917834 |
cctgcaacatattttaccaacatgcttaaaagacagaatatggcaacttccctaatttatatagataataagatacaagacacacaaatacata |
6917927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 256
Target Start/End: Complemental strand, 6960450 - 6960224
Alignment:
| Q |
27 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagctgggatggagtac |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||| |
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| T |
6960450 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccaggctagtgcaagctgagatggagtac |
6960351 |
T |
|
| Q |
127 |
atcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcctgcaacatatttta |
226 |
Q |
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| T |
6960350 |
atcccttctttacagccagttcattaaccttatcaaatatagtctgattctgctgcaggttttcaggttgaaatctaggcaaatgctgcaacata-ttta |
6960252 |
T |
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| Q |
227 |
ccaacatgcttaaaagacagaatatggcaa |
256 |
Q |
| |
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| ||||| ||||||||||||||||||||| |
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| T |
6960251 |
c--acatgtttaaaagacagaatatggcaa |
6960224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 6920350 - 6920563
Alignment:
| Q |
11 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
110 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | |||| |
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| T |
6920350 |
cacagatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgca |
6920449 |
T |
|
| Q |
111 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaat |
210 |
Q |
| |
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||||| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| |||||||| |||||||| |
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| T |
6920450 |
agctgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatcgaggcaaat |
6920549 |
T |
|
| Q |
211 |
cctgcaacatattt |
224 |
Q |
| |
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|||||||| |||| |
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| T |
6920550 |
gctgcaacaaattt |
6920563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 6957862 - 6957649
Alignment:
| Q |
11 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | |||| |
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| T |
6957862 |
cacagatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgca |
6957763 |
T |
|
| Q |
111 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaat |
210 |
Q |
| |
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||||| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| |||||||| |||||||| |
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| T |
6957762 |
agctgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatcgaggcaaat |
6957663 |
T |
|
| Q |
211 |
cctgcaacatattt |
224 |
Q |
| |
|
|||||||| |||| |
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| T |
6957662 |
gctgcaacaaattt |
6957649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 6967971 - 6968175
Alignment:
| Q |
12 |
acagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaa |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967971 |
acagataaagcaccaatgttttgattaaagttctctattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaa |
6968070 |
T |
|
| Q |
112 |
gctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaatctaggcaaatc |
211 |
Q |
| |
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|||| |||||||||||||||||||| | |||||||||||||| | ||||| | |||||||| || |||||||| |||||||||||||| |||| || |
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| T |
6968071 |
gctgagatggagtacatcccttcttagcagccagttcattaaccctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatata |
6968170 |
T |
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| Q |
212 |
ctgca |
216 |
Q |
| |
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||||| |
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| T |
6968171 |
ctgca |
6968175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 6917923 - 6917958
Alignment:
| Q |
217 |
acatattttaccaacatgcttaaaagacagaatatg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6917923 |
acatattttaccaacatgcttaaaagacagaatatg |
6917958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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