View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165-Insertion-1 (Length: 982)
Name: NF5165-Insertion-1
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 3e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 232 - 387
Target Start/End: Complemental strand, 19371171 - 19371016
Alignment:
| Q |
232 |
gtttattcaaaagatttaattttgaaaaatgaactcaataaaagaacaaagcattctctggtaggcattacggaagcaaacactagaatgatagattgag |
331 |
Q |
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| T |
19371171 |
gtttattcgaaagatttaattttgaaaaatgaattcaataaatgaacaaagcattctctgctaggcattatggaagcaaacactagaatgatagattgag |
19371072 |
T |
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| Q |
332 |
atttatcatttaagtgaagcaaaagcagtacactatttatgccccgtggtagcagg |
387 |
Q |
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| T |
19371071 |
atttatcatttaagtgaagcaaaagctgtacactatttatgccccaaggtagcagg |
19371016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 42198493 - 42198655
Alignment:
| Q |
66 |
gtgtaaccgtctaactgtattatctggcatctgccagtcatctaggagttgctgactaacacgtgtcatccagctagaggcagttagctta----tataa |
161 |
Q |
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| T |
42198493 |
gtgtaactgtctaactgtattaactggcaactgccaatcatctaggagttgctgactgacgcttgtcagtcagctagaggcagttagtttatgtctataa |
42198592 |
T |
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| Q |
162 |
atagactattcaacctcatgtaacta--accgagagatcattctaacagaattcacaaaaaca |
222 |
Q |
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| T |
42198593 |
atagacttttcaacctaatgtaattaagactaagaaatcaatctaacagaattcacaaaaaca |
42198655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 19371720 - 19371661
Alignment:
| Q |
158 |
ataaatagactattcaacctcatgtaactaaccgagagatcattctaacagaattcacaa |
217 |
Q |
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| T |
19371720 |
ataaatagactcttcaacctcatgtaactaactaagaaatcatgctaacagaactcacaa |
19371661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 21199984 - 21200177
Alignment:
| Q |
48 |
cactagattactctccctgtgtaaccgtctaactgtattatctggcatctgccagtcatctaggagttgctgactaacacgtgtcatccagctagaggca |
147 |
Q |
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| T |
21199984 |
cactagattactctccgtgtgtaactgtctaactgtgttatctggcaactgccaatcatctaggaggtgccgaatgacgcttgtcagtcagctagaggca |
21200083 |
T |
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| Q |
148 |
gttagctta----tataaatagac---tattcaacctcatgtaacta------accgagagatcattctaacagaattcacaaaaacagttata |
228 |
Q |
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| T |
21200084 |
gttagtttatgtctataaatagactttttttcaacctcatgtaactaactaagactaagaaatcaatctaacagaattcacaaaaacagttata |
21200177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 11521557 - 11521620
Alignment:
| Q |
48 |
cactagattactctccctgtgtaaccgtctaactgtattatctggcatctgccagtcatctagg |
111 |
Q |
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| T |
11521557 |
cactatattactctccctgtgtaactgtccaactgtattaactagcaactgccagtcacctagg |
11521620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 11521660 - 11521733
Alignment:
| Q |
158 |
ataaatagactattcaacctcatgtaactaaccgagagatcattctaacagaattcacaaaaacagttataacag |
232 |
Q |
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| T |
11521660 |
ataaatacactcatcaacctcatgtaactgattgagaaatcattctaacagaattca-gaaaacagttacaacag |
11521733 |
T |
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