View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165-Insertion-10 (Length: 346)

Name: NF5165-Insertion-10
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165-Insertion-10
NF5165-Insertion-10
[»] chr4 (1 HSPs)
chr4 (2-346)||(28035585-28035929)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 346
Target Start/End: Original strand, 28035585 - 28035929
Alignment:
Q  2 ccaacagctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaactttgagaaactgttccaccacagcttttgcagcaggggcagttg 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035585 ccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaactttgagaaactgttccaccacagcttttgcagcaggggcagttg 28035684  T
Q  102 gtttgaaagcagagcgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatctgtaccctt 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28035685 gtttgaaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatcagtaccctt 28035784  T
Q  202 ttccaacaaaaccgcgaatcacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgcc 301  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035785 ttccaacaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgcc 28035884  T
Q  302 attgctttcatttgtgcctttgtttcagaatcttcaaattctctc 346  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  28035885 attgctttcatttgtgcctttgtttcaggatcttcaaattctctc 28035929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University