View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165-Insertion-3 (Length: 616)
Name: NF5165-Insertion-3
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 3361030 - 3361634
Alignment:
| Q |
8 |
ttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacattgaggatgttctcatctagatgctgcttcaaattgaagaaaaacaca |
107 |
Q |
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| T |
3361030 |
ttcacctcctccctcccttatgataccattgtctggtgcatgttcagtaacattcaggatgttctcatctagatgctgcttcaaattgaagaaaaacaca |
3361129 |
T |
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| Q |
108 |
gttaagtttgataccaagtgtgaagaagattaatatttgtgtgcaagaagaaacaacaatatcatctaaagcactgaacttcatgtaattaaagccaaac |
207 |
Q |
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| T |
3361130 |
gttaagtttgataccaagtgtgaagaagattaatatttgtgtacaagaagaaacaacaatatcatctaaagcactgaacttcatgtaa----agccaaac |
3361225 |
T |
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| Q |
208 |
cttgccatgagaatcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctaca |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361226 |
cttgccatgtgaatcttgccgatgatcttcaagtaaagccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctaca |
3361325 |
T |
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| Q |
308 |
taatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgct |
407 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361326 |
taatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgct |
3361425 |
T |
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| Q |
408 |
cagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacaca |
507 |
Q |
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| T |
3361426 |
caatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacaca |
3361525 |
T |
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| Q |
508 |
tgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||| |
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| T |
3361526 |
tgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaa |
3361625 |
T |
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| Q |
608 |
ttagtcagt |
616 |
Q |
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| T |
3361626 |
ttagtcagt |
3361634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 245 - 573
Target Start/End: Original strand, 35907360 - 35907688
Alignment:
| Q |
245 |
gccttcattatttcatgaagtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcag |
344 |
Q |
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||||||| ||||||||||||| ||||||| ||| ||||| |||||| | ||||| | || ||| ||| | |||| ||||||| |||||| | || ||| |
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| T |
35907360 |
gccttcactatttcatgaagtctctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaa |
35907459 |
T |
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| Q |
345 |
cgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatc |
444 |
Q |
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| T |
35907460 |
catcaagctggttgattttttctgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagatt |
35907559 |
T |
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| Q |
445 |
attttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatct |
544 |
Q |
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| T |
35907560 |
catttccaattgctcaatctcattatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatct |
35907659 |
T |
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| Q |
545 |
gcaaaactcaacagaaagctacagtaaat |
573 |
Q |
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| T |
35907660 |
gcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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