View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165-Insertion-4 (Length: 616)
Name: NF5165-Insertion-4
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 283 - 616
Target Start/End: Original strand, 26454087 - 26454414
Alignment:
| Q |
283 |
cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactgttctcaaattttacgcaagcaattttcaatatttctagaatagtcagt |
382 |
Q |
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| T |
26454087 |
cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactattttcaaattttacgcaagcaattttcaatatttctataatagtca-- |
26454184 |
T |
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| Q |
383 |
cattgtgcggtgcgcacaaccttttacacatcatgcatgatgcagtgattgaacaccttcaaccgtgttccatgtttcgtgatacacacaactcattgca |
482 |
Q |
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| T |
26454185 |
--ttgtgcggtgcgcacaaccttttacacatcatgcatgatgcagtgattgaacaccttcaaccttgttccatgtttcgtgatacac--aactcattgca |
26454280 |
T |
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| Q |
483 |
cacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgcgtggctactagcacccgttcaacataaggcagtagctcgtat |
582 |
Q |
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| T |
26454281 |
cacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgcgtggctcctagcacccgttcgacataaggcagtagctcgtat |
26454380 |
T |
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| Q |
583 |
tttctcaattcttcatctcttgttctatttctca |
616 |
Q |
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| T |
26454381 |
tttctcaattcttcatctcttgttctatttctca |
26454414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 26453335 - 26453612
Alignment:
| Q |
7 |
aggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctgtactttttctaatacagtcagtgctagaaca |
106 |
Q |
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| T |
26453335 |
aggctcctcatatttcttctctcattttccaatatacctcttctctctctgcttttcttaccttttctgtactttttctaatgcagtcagtgctagaaca |
26453434 |
T |
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| Q |
107 |
tgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattcttttgctaagaaaactaggaaa |
206 |
Q |
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| T |
26453435 |
tgttctagtgggagaattgttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatgttcttttgctaagaaaactaggaaa |
26453534 |
T |
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| Q |
207 |
gaataggcgttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc |
284 |
Q |
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| T |
26453535 |
gaataggcgttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc |
26453612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 47680416 - 47680266
Alignment:
| Q |
76 |
tactttttctaatacagtcagtgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaa |
175 |
Q |
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| T |
47680416 |
tactttttctgatgcagcaactgctagaacgtgttctaatgggagaactgttctccacaatgtcatccagctcattgatctccaatgcataaaatataaa |
47680317 |
T |
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| Q |
176 |
aatatattct--tttgctaagaaaactaggaaagaataggcgttggagatg |
224 |
Q |
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| T |
47680316 |
aatatgttcttgtttgctaagaacaccaagaaagaacagacgttggagatg |
47680266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 31704810 - 31704706
Alignment:
| Q |
126 |
ttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaagaaaactaggaaagaataggcgttggagat |
223 |
Q |
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| T |
31704810 |
ttctccacagtgtcatccagctcaacgatctccaatgcatacaacataaaaatatgttcttgtttgctaagaatactaagaaagaacaggaatcggagat |
31704711 |
T |
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| Q |
224 |
gctct |
228 |
Q |
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| T |
31704710 |
gctct |
31704706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 33948485 - 33948371
Alignment:
| Q |
97 |
tgctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaag |
194 |
Q |
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| T |
33948485 |
tgctataacgtgttctagtggaataactattctccacagtgtcatccacctcattgatctccaatacatagaacataaaaatatgttcttgtttgctaag |
33948386 |
T |
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| Q |
195 |
aaaactaggaaagaa |
209 |
Q |
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| T |
33948385 |
aacactaagaaagaa |
33948371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 11727316 - 11727407
Alignment:
| Q |
139 |
catccagctcgttgatctccaatacataaaacataaaaatatattctt--ttgctaagaaaactaggaaagaataggcgttggagatgctct |
228 |
Q |
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| T |
11727316 |
catccaactcattgatctccaatgcatataacataaaaatatgttcttgattgctaagaacactagaaaagaacatgcgttggagatactct |
11727407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 2210309 - 2210385
Alignment:
| Q |
98 |
gctagaacatgttctagtgggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataa |
174 |
Q |
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| T |
2210309 |
gctaaaacgtgttctagtgggagaactgttctctacagtgtcatccaccttattgatctccaatgcatacaacataa |
2210385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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