View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165-Insertion-5 (Length: 519)

Name: NF5165-Insertion-5
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165-Insertion-5
NF5165-Insertion-5
[»] chr1 (2 HSPs)
chr1 (28-519)||(2598384-2598897)
chr1 (213-272)||(2583868-2583927)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 28 - 519
Target Start/End: Complemental strand, 2598897 - 2598384
Alignment:
Q  28 aatatgtcaaaattttctactccttttgccttgacaaatacaggcatccatccaaacttaaccatttaaa----aatctctacacatacatcatattcat 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    ||||||||||||||||||||||||||    
T  2598897 aatatgtcaaaattttctactccttttgccttgacaa-tacaggcatccatccaaatttaaccatttaaataaaaatctctacacatacatcatattcat 2598799  T
Q  124 atgatgtagaacattaaaaaacaagcggtttacactcttcactgttcctgcaaaatacgcagtttccagcaagagatttagaaattaaggctcacg--tt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||    
T  2598798 atgatgtagaacattaaaaaacaagcggtttacactcttcactgttcctgcaaaatacgcagtttccagcaagagacttagaaattaaggctcacgcgtt 2598699  T
Q  222 ccaccaaaatccaatagaaacatattctcctctccaatctcgcaacaccttctggaaccctcccatgttaacgtttacagattgaacagcaacgcagcga 321  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||    
T  2598698 tcaccaaaatccaattgaaacatattctcctctccaatctcgcaacaccttctggaaccctcccatgttaacgtttacaaattgaacagcaacatagcga 2598599  T
Q  322 caaacacaaatggccttcgggcatagcttgcatcctcagtgactctaatgttcagcacaattgaaatcatgaaagtaatgaagaaccttttgacgcggaa 421  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2598598 caaacacaaatggctttcgggcatagcttgcatcctcagtgactttaatgttcagcacaattggaatcatgaaagtaatgaagaaccttttgacgcggaa 2598499  T
Q  422 gcattgg------------------ctttgcagctgaacaggttttgtgcaaacgtagatattaaaagtagatcagtataggcattccccgtagaaagta 503  Q
    |||||||                  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  2598498 gcattggcttcacgctagggattcactttgcagctgaacaggttttgtgcaaacgtaaatattaaaagtagatcagtataggcatt-gccgtagaaagta 2598400  T
Q  504 gaaacagcaacaaatt 519  Q
    ||||||||||||||||    
T  2598399 gaaacagcaacaaatt 2598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 2583927 - 2583868
Alignment:
Q  213 gctcacgttccaccaaaatccaatagaaacatattctcctctccaatctcgcaacacctt 272  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  2583927 gctcacattccaccaaaatccaatcgaaacatattctcctctccaatctcataacacctt 2583868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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