View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165-Insertion-6 (Length: 378)
Name: NF5165-Insertion-6
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 52592824 - 52592452
Alignment:
| Q |
6 |
catattttttagcctaatatatgctaatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttcc |
105 |
Q |
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| T |
52592824 |
catattttttagcctaatatatgctaatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttcc |
52592725 |
T |
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| Q |
106 |
ccacctccaaaaaccgtattttgtattccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatca |
205 |
Q |
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| T |
52592724 |
ccacctccgaaaaccgtattttgtattccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatca |
52592625 |
T |
|
| Q |
206 |
tcgccaagacaattgtttcccattgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592624 |
tcgccaagacaattgtttcccattgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatct |
52592525 |
T |
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| Q |
306 |
tgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagt |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592524 |
tgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagt |
52592452 |
T |
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