View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165-Insertion-8 (Length: 396)
Name: NF5165-Insertion-8
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165-Insertion-8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 203 - 396
Target Start/End: Original strand, 45439650 - 45439843
Alignment:
| Q |
203 |
ttattactttgcatacaaagaatcttctctttgagcttgcatgatcttctctcaccatactatctttgagagtactcaatatgacaataaagaaagttgt |
302 |
Q |
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| T |
45439650 |
ttattactttgcatacaaagaatcttctctttgaacttgcatgatcttctctcaccatactatctttgagagtactcaaaatgacaataaagaaagttgt |
45439749 |
T |
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| Q |
303 |
gcaaccaacactttacccaattcaagattctaaaggttggccatcattttcttgacagaggaataatttattcagttagtttaatcataaatgc |
396 |
Q |
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| T |
45439750 |
gcaaccaacactttacccaattcaagattctaaaggttggccatcattttcttgacagaggaataatttattcagttagtttaatcattaatgc |
45439843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 45439431 - 45439622
Alignment:
| Q |
8 |
aatagtcactttttctttgccatgtcatatgttctatgtatctatccattatcgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtga |
107 |
Q |
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| T |
45439431 |
aatagtcactttttctttgccatgtcatatgttctatgtatctatccattattgtaatgactaatctgtaccggaaaattgtgtatgtcacttttagtga |
45439530 |
T |
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| Q |
108 |
gtttttccttctatccattttttccattcacaaattttaaaatgaaaatcttatt--aaaaattgagttcaattttactcggaacaatttaa |
197 |
Q |
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| T |
45439531 |
gtttttccttctatccattttttccattcacaaattttaaaatgaaaatcttattaaaaaaaatgagttcaatttcactcggaacaatttaa |
45439622 |
T |
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