View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_high_12 (Length: 425)
Name: NF5165_high_12
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 150 - 404
Target Start/End: Original strand, 925329 - 925584
Alignment:
| Q |
150 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccannnnnnngtatacatttgatcttcctagtacgcatgttcaaatgtatatgcga |
249 |
Q |
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| T |
925329 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccatttttttgtatacatttgatcttcctaggacgcatgttcaaatgtatatgcga |
925428 |
T |
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| Q |
250 |
agtatctcatat-------tagtcatgtacaatatgnnnnnnngttagaggatgtaaaatctgtttaaagnnnnnnngaaattacatacatatacatatg |
342 |
Q |
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| T |
925429 |
agtatctcatattagtcaatagtcatgtacaatatgtttttttgttagaggatgtaaaatctgtttaaagaaaaaaagaaattac------atacatatg |
925522 |
T |
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| Q |
343 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta |
404 |
Q |
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| T |
925523 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta |
925584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 925142 - 925287
Alignment:
| Q |
4 |
gacaagtaatgaatttgttttggctataatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagatttcatgaga |
103 |
Q |
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| T |
925142 |
gacaagtaatgaatttgttttgg-tctaatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagatttcatgaga |
925240 |
T |
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| Q |
104 |
tattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
150 |
Q |
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| T |
925241 |
tattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
925287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 926968 - 927009
Alignment:
| Q |
81 |
attatccaatagatttcatgagatattgaaaaatcatagata |
122 |
Q |
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| T |
926968 |
attatccaatggatttcatgagatattgaaaaattatagata |
927009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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