View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_high_2 (Length: 581)

Name: NF5165_high_2
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_high_2
NF5165_high_2
[»] chr6 (39 HSPs)
chr6 (209-424)||(26852426-26852641)
chr6 (15-206)||(26852014-26852205)
chr6 (252-405)||(27703094-27703247)
chr6 (15-160)||(26649979-26650124)
chr6 (15-160)||(26755947-26756092)
chr6 (22-168)||(27682372-27682518)
chr6 (210-332)||(27079104-27079226)
chr6 (210-351)||(27661809-27661950)
chr6 (87-168)||(27715137-27715218)
chr6 (22-163)||(27703481-27703625)
chr6 (61-166)||(27078755-27078861)
chr6 (79-160)||(26626652-26626733)
chr6 (79-160)||(26732629-26732710)
chr6 (81-160)||(28782481-28782560)
chr6 (81-160)||(28789855-28789934)
chr6 (91-166)||(25486821-25486898)
chr6 (396-561)||(26626929-26627098)
chr6 (396-561)||(26732906-26733075)
chr6 (210-318)||(31288219-31288325)
chr6 (91-166)||(25548422-25548497)
chr6 (87-154)||(28795879-28795946)
chr6 (80-161)||(26953124-26953205)
chr6 (210-337)||(26888828-26888960)
chr6 (256-343)||(26059696-26059783)
chr6 (256-343)||(26079666-26079753)
chr6 (353-424)||(26888957-26889027)
chr6 (356-425)||(27423823-27423891)
chr6 (267-343)||(25487058-25487134)
chr6 (22-74)||(26805982-26806034)
chr6 (483-526)||(26639205-26639248)
chr6 (483-526)||(26745171-26745214)
chr6 (15-73)||(26638857-26638915)
chr6 (15-73)||(26744823-26744881)
chr6 (113-166)||(26146443-26146496)
chr6 (374-431)||(26806255-26806312)
chr6 (371-431)||(27589562-27589622)
chr6 (448-517)||(28782977-28783046)
chr6 (256-284)||(25514498-25514526)
chr6 (256-284)||(26146658-26146686)
[»] chr8 (1 HSPs)
chr8 (87-168)||(29270441-29270522)
[»] scaffold0349 (1 HSPs)
scaffold0349 (87-168)||(16726-16807)
[»] scaffold0277 (2 HSPs)
scaffold0277 (81-160)||(10265-10344)
scaffold0277 (81-160)||(1305-1384)
[»] scaffold0419 (1 HSPs)
scaffold0419 (87-160)||(11005-11078)
[»] scaffold0003 (1 HSPs)
scaffold0003 (356-425)||(63472-63540)
[»] chr4 (7 HSPs)
chr4 (20-73)||(18676259-18676312)
chr4 (20-73)||(18720789-18720842)
chr4 (315-346)||(18675990-18676021)
chr4 (20-156)||(18696034-18696158)
chr4 (315-346)||(18720520-18720551)
chr4 (20-73)||(18686299-18686352)
chr4 (20-73)||(18728225-18728278)
[»] chr1 (1 HSPs)
chr1 (86-160)||(26139533-26139607)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 209 - 424
Target Start/End: Original strand, 26852426 - 26852641
Alignment:
Q  209 gaggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagtt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26852426 gaggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgtatatagtcaattgcaaattcgttgtttctagtt 26852525  T
Q  309 ggagatgtttttcaaatgatgagacatgatataagattttgtggatgatgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgt 408  Q
    ||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852526 ggagaagtttttcaaatgatgagacatgatgtgagattttgttgatgatgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgt 26852625  T
Q  409 agcacaaacacttctc 424  Q
    ||||||||||||||||    
T  26852626 agcacaaacacttctc 26852641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 26852014 - 26852205
Alignment:
Q  15 gagggggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctc 114  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852014 gagggggatgtggtattcaccaatccttctagtagaaagagaaaactagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctc 26852113  T
Q  115 ctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggaggatactgattattttagtacacagtttctaattggaatgcac 206  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  26852114 ctctaaaaaagcaaagattgatggaagttagagtttcagagacagaggaggatgctgattattttagtaaacagtttctaattggaatgcac 26852205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 252 - 405
Target Start/End: Complemental strand, 27703247 - 27703094
Alignment:
Q  252 ttacaaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttggagatgtttttcaaatgatgagacatgatataagattttgtg 351  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||| ||    
T  27703247 ttacaaatgttgattaatttctgtatatagtcaattacaaattcgttgtttctagttggagaagttattcaaatgatgatacatgatttaagattttctg 27703148  T
Q  352 gatgatgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctt 405  Q
    ||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  27703147 gattatgtttgtgcaatcttaaaatattgtttctatttacatttggggatgctt 27703094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 26649979 - 26650124
Alignment:
Q  15 gagggggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctc 114  Q
    |||||||| |||  ||||||  |||||| ||||||||||| |||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  26649979 gagggggaagtgagattcactaatccttatagtagaaagagaaaacttgatgaatatcttttcatttacagcaatactttattatcacaatttgtgcctc 26650078  T
Q  115 ctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||||||||| |||||||| ||||||| ||||||||| |||||||    
T  26650079 ctctaaaaaagcaaagattggtggaagtgggagtttcaaagacaga 26650124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 26755947 - 26756092
Alignment:
Q  15 gagggggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctc 114  Q
    |||||||| |||  ||||||  |||||| ||||||||||| |||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  26755947 gagggggaagtgagattcactaatccttatagtagaaagagaaaacttgatgaatatcttttcatttacagcaatactttattatcacaatttgtgcctc 26756046  T
Q  115 ctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||||||||| |||||||| ||||||| ||||||||| |||||||    
T  26756047 ctctaaaaaagcaaagattggtggaagtgggagtttcaaagacaga 26756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 27682372 - 27682518
Alignment:
Q  22 atgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagcaata---cttcattatcacaatttgtgcctcctct 118  Q
    ||||||||||||| ||||||| || || ||||||||||  ||||||||||||   |||| | |||||||   |||||||||||||||||| |||||||||    
T  27682372 atgtggtattcacagatccttgtattacaaagacaaaatcagatgaatatct---caatcagagcaataatacttcattatcacaatttgagcctcctct 27682468  T
Q  119 aaaaaagaaaagattgatggaagttggagtttcagagacagaggaggata 168  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  27682469 aaaaaagcaaagattggtggaagttggagtttcagagacagaggaggata 27682518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 27079104 - 27079226
Alignment:
Q  210 aggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttg 309  Q
    ||||||||| ||||||||||||||||||  |||| ||||| |||| ||| ||||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  27079104 aggtttgtgctttgctgtttacactttacttcatcatcataattataaacgttgattaatttctgtatatattcaattacaaatttgttgtttctagttg 27079203  T
Q  310 gagatgtttttcaaatgatgaga 332  Q
    || | |||||| |||||||||||    
T  27079204 gacaagttttttaaatgatgaga 27079226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 210 - 351
Target Start/End: Complemental strand, 27661950 - 27661809
Alignment:
Q  210 aggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttg 309  Q
    ||||||||| ||| ||||||||| || | |||||||||||||||| |||| |||||||||||||||||||||||||||  |||||| |||||| ||| ||    
T  27661950 aggtttgtgctttactgtttacagttgaaatcattatcattattataaatattgattaatttctgtatatagtcaattacaaattcattgtttatagatg 27661851  T
Q  310 gagatgtttttcaaatgatgagacatgatataagattttgtg 351  Q
    |||| |||  | |||| |||||||||||| ||||||| ||||    
T  27661850 gagaagttgcttaaatcatgagacatgatgtaagattatgtg 27661809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 27715218 - 27715137
Alignment:
Q  87 aatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggaggata 168  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  27715218 aatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggaggata 27715137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 27703625 - 27703481
Alignment:
Q  22 atgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagc---aatacttcattatcacaatttgtgcctcctct 118  Q
    |||||||||||| |||||||| || | ||||||  ||| |||||||||||||   |  |||||||   ||||||||||||||||||||||||||||||||    
T  27703625 atgtggtattcatcgatccttatattcgaaagatgaaattagatgaatatctcaacccttatagcaataatacttcattatcacaatttgtgcctcctct 27703526  T
Q  119 aaaaaagaaaagattgatggaagttggagtttcagagacagagga 163  Q
    ||||||| |||||| | ||||| | ||||||||||||||||||||    
T  27703525 aaaaaagcaaagatcggtggaaatgggagtttcagagacagagga 27703481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 27078755 - 27078861
Alignment:
Q  61 tagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctcctct-aaaaaagaaaagattgatggaagttggagtttcagagacag 159  Q
    |||||||||||||| ||||| ||||||||||||| |||||||| ||||  |||||||| ||||||| || ||||| ||||||| |||||||| |||||||    
T  27078755 tagatgaatatcttctcaatgatagcaatacttcgttatcacagtttgaacctcctctaaaaaaagcaaggattggtggaagtgggagtttccgagacag 27078854  T
Q  160 aggagga 166  Q
    |||||||    
T  27078855 aggagga 27078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 26626652 - 26626733
Alignment:
Q  79 attatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| | |||||||||||||||||    
T  26626652 attatagcaatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 26732629 - 26732710
Alignment:
Q  79 attatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| | |||||||||||||||||    
T  26732629 attatagcaatacttcattatcacagtttgagcctcctctgaaaaagcaaagattggtggaaatgggagtttcagagacaga 26732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 28782481 - 28782560
Alignment:
Q  81 tatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| | |||||||||||||||    
T  28782481 tatagaaatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 28789855 - 28789934
Alignment:
Q  81 tatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| | |||||||||||||||    
T  28789855 tatagaaatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 28789934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 25486821 - 25486898
Alignment:
Q  91 cttcattatcacaattt--gtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggagga 166  Q
    |||||||||||||||||  |||||||||||||||||| |||||||| ||||||| ||||||||||||| || ||||||    
T  25486821 cttcattatcacaatttatgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggagga 25486898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 561
Target Start/End: Original strand, 26626929 - 26627098
Alignment:
Q  396 gaggatgctttgtagcacaaacacttctcattgaagacgtgt-tagtatccaacatgtgtctgtgtccaacaccaacatgataccag--cacatgtgatt 492  Q
    ||||||||||||||| |||||||||||||||||||| | ||  | |||| ||||||||||| |||| ||||||||||| ||||||    |||||| ||||    
T  26626929 gaggatgctttgtagaacaaacacttctcattgaaggcatgactggtatgcaacatgtgtccgtgtacaacaccaacacgataccgcgacacatgcgatt 26627028  T
Q  493 aaattcatatatgctattttctcaatttactatcaaagtcg-tgtatcagtcactatcaagtctagtgtc 561  Q
    | ||  | ||||| |||||| | || ||||||||  ||||| || |||||||||||||||||| ||||||    
T  26627029 acatctaaatatgttatttttttaaattactatcggagtcgatgaatcagtcactatcaagtccagtgtc 26627098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 396 - 561
Target Start/End: Original strand, 26732906 - 26733075
Alignment:
Q  396 gaggatgctttgtagcacaaacacttctcattgaagacgtgt-tagtatccaacatgtgtctgtgtccaacaccaacatgataccag--cacatgtgatt 492  Q
    ||||||||||||||| |||||||||||||||||||| | ||  | |||| ||||||||||| |||| ||||||||||| ||||||    |||||| ||||    
T  26732906 gaggatgctttgtagaacaaacacttctcattgaaggcatgactggtatgcaacatgtgtccgtgtacaacaccaacacgataccgcgacacatgcgatt 26733005  T
Q  493 aaattcatatatgctattttctcaatttactatcaaagtcg-tgtatcagtcactatcaagtctagtgtc 561  Q
    | ||  | ||||| |||||| | || ||||||||  ||||| || |||||||||||||||||| ||||||    
T  26733006 acatctaaatatgttatttttttaaattactatcggagtcgatgaatcagtcactatcaagtccagtgtc 26733075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 31288219 - 31288325
Alignment:
Q  210 aggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttg 309  Q
    ||||||||||||||||||||||   | | |||||||||||||||| |||||||||||||||||||  |||| ||||||   ||||| |||||||||| ||    
T  31288219 aggtttgtggtttgctgtttactgatgaaatcattatcattattataaatgttgattaatttctg--tatactcaattacgaattcattgtttctagatg 31288316  T
Q  310 gagatgttt 318  Q
    |||| ||||    
T  31288317 gagaagttt 31288325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 25548422 - 25548497
Alignment:
Q  91 cttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggagga 166  Q
    ||||||||| ||||||| ||||||||| ||||||| |||||||| ||||||| ||||||||||||| || ||||||    
T  25548422 cttcattattacaatttatgcctcctcaaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggagga 25548497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 28795879 - 28795946
Alignment:
Q  87 aatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcaga 154  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| | |||||||||    
T  28795879 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 28795946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 26953124 - 26953205
Alignment:
Q  80 ttatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagag 161  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||| | |||||  | ||||| ||||||||||||||||||    
T  26953124 ttatagcaatactttattatcgcaatttgagcctcctctgaaaaagcatagatttgttgaagtgggagtttcagagacagag 26953205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 337
Target Start/End: Original strand, 26888828 - 26888960
Alignment:
Q  210 aggtttgtggtttgctgtttacactttatatcattatcattattacaaatgttgattaatttctgta-----tatagtcaattgaaaattcgttgtttct 304  Q
    |||||||||||||||||||||||||||| ||||||||| ||| || ||| ||| |||||||| ||||     |||||||||||  ||| || ||||||||    
T  26888828 aggtttgtggtttgctgtttacactttagatcattatcgttagtataaacgttaattaatttatgtacatactatagtcaattacaaaatcattgtttct 26888927  T
Q  305 agttggagatgtttttcaaatgatgagacatga 337  Q
    |  || ||| |||||| ||||  ||||||||||    
T  26888928 aactgaagaagttttttaaattgtgagacatga 26888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 26059696 - 26059783
Alignment:
Q  256 aaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttggagatgtttttcaaatgatgagacatgatataag 343  Q
    |||||||||||||||||||||| |||||| ||  ||||||  |||||||||||||||| |||| | |||  |||||||||||| ||||    
T  26059696 aaatgttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26059783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 26079666 - 26079753
Alignment:
Q  256 aaatgttgattaatttctgtatatagtcaattgaaaattcgttgtttctagttggagatgtttttcaaatgatgagacatgatataag 343  Q
    |||||||||||||||||||||| |||||| ||  ||||||  |||||||||||||||| |||| | |||  |||||||||||| ||||    
T  26079666 aaatgttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26079753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 26888957 - 26889027
Alignment:
Q  353 atgatgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgtagcacaaacacttctc 424  Q
    |||| ||||||||| ||| ||||||||||||||||||||  | || |||||||||||||||| |||||||||    
T  26888957 atgaagtttgtgcagtct-aaaatattgtttcaatttactgtggaagatgctttgtagcacatacacttctc 26889027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 27423891 - 27423823
Alignment:
Q  356 atgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgtagcacaaacacttctca 425  Q
    |||||||| |||||| ||||||||| ||||| ||||  | ||||||||||||||||||| ||||||||||    
T  27423891 atgtttgttcactct-aaaatattgcttcaacttactgtggaggatgctttgtagcacatacacttctca 27423823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 25487058 - 25487134
Alignment:
Q  267 aatttctgtatatagtcaattgaaaattcgttgtttctagttggagatgtttttcaaatgatgagacatgatataag 343  Q
    |||||||||||||||||| ||  ||||||  |||||||||||||||| |||| | |||  |||||||||||| ||||    
T  25487058 aatttctgtatatagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 25487134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 26805982 - 26806034
Alignment:
Q  22 atgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatctt 74  Q
    |||||||||||||| |||||| || |||||||||||||  |||||||||||||    
T  26805982 atgtggtattcaccaatccttatattagaaagacaaaatcagatgaatatctt 26806034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Original strand, 26639205 - 26639248
Alignment:
Q  483 acatgtgattaaattcatatatgctattttctcaatttactatc 526  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||    
T  26639205 acatgtgattaaattcaaatatgttattttctcaatttcctatc 26639248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Original strand, 26745171 - 26745214
Alignment:
Q  483 acatgtgattaaattcatatatgctattttctcaatttactatc 526  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||    
T  26745171 acatgtgattaaattcaaatatgttattttctcaatttcctatc 26745214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 26638857 - 26638915
Alignment:
Q  15 gagggggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    |||| ||||||| |||||||| |||||| || |||||||| |||| |||||||||||||    
T  26638857 gaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaatatct 26638915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 26744823 - 26744881
Alignment:
Q  15 gagggggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    |||| ||||||| |||||||| |||||| || |||||||| |||| |||||||||||||    
T  26744823 gaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaatatct 26744881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 26146443 - 26146496
Alignment:
Q  113 tcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggagga 166  Q
    ||||| ||||||| |||||||| ||||||| ||||||||||||| || ||||||    
T  26146443 tcctcaaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggagga 26146496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 26806255 - 26806312
Alignment:
Q  374 aatattgtttcaatttacatttgaggatgctttgtagcacaaacacttctcattgaag 431  Q
    |||||||||| ||||||   ||||||||| ||||||||||||||||||| | ||||||    
T  26806255 aatattgtttgaatttaatgttgaggatgttttgtagcacaaacacttcccgttgaag 26806312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 27589622 - 27589562
Alignment:
Q  371 taaaatattgtttcaatttacatttg-aggatgctttgtagcacaaacacttctcattgaag 431  Q
    ||||||||||||| |||||| || || |||||| ||||||||||||||| ||||||||||||    
T  27589622 taaaatattgtttgaattta-atgtgcaggatgttttgtagcacaaacaattctcattgaag 27589562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 517
Target Start/End: Original strand, 28782977 - 28783046
Alignment:
Q  448 catgtgtctgtgtccaacaccaacatgataccagcacatgtgattaaattcatatatgctattttctcaa 517  Q
    ||||||||||||||||| | |||||  ||||   |||||||||||| ||||| ||||| |||||||||||    
T  28782977 catgtgtctgtgtccaatatcaacacaatactgacacatgtgattacattcaaatatgttattttctcaa 28783046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 25514498 - 25514526
Alignment:
Q  256 aaatgttgattaatttctgtatatagtca 284  Q
    |||||||||||||||||||||||||||||    
T  25514498 aaatgttgattaatttctgtatatagtca 25514526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 26146658 - 26146686
Alignment:
Q  256 aaatgttgattaatttctgtatatagtca 284  Q
    |||||||||||||||||||||||||||||    
T  26146658 aaatgttgattaatttctgtatatagtca 26146686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 29270522 - 29270441
Alignment:
Q  87 aatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggaggata 168  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  29270522 aatacttcattatcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggaggata 29270441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 16726 - 16807
Alignment:
Q  87 aatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacagaggaggata 168  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  16726 aatacttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggaggata 16807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 10344 - 10265
Alignment:
Q  81 tatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| | |||||||||||||||    
T  10344 tatagaaatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 10265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 1384 - 1305
Alignment:
Q  81 tatagcaatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    ||||| ||||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||| | ||||||||| |||||    
T  1384 tatagaaatacttcattattacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagacacaga 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 11005 - 11078
Alignment:
Q  87 aatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| | |||||||||||||||    
T  11005 aatacttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagagacaga 11078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 63472 - 63540
Alignment:
Q  356 atgtttgtgcactcttaaaatattgtttcaatttacatttgaggatgctttgtagcacaaacacttctca 425  Q
    |||||||| |||||| ||||||||| ||||| ||||  | ||||||||||||||||||| ||||||||||    
T  63472 atgtttgttcactct-aaaatattgcttcaacttactgtggaggatgctttgtagcacatacacttctca 63540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18676312 - 18676259
Alignment:
Q  20 ggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    ||||||| |||||||| |||||| ||||||||||| |||| |||||||||||||    
T  18676312 ggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaatatct 18676259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18720842 - 18720789
Alignment:
Q  20 ggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    ||||||| |||||||| |||||| ||||||||||| |||| |||||||||||||    
T  18720842 ggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatatct 18720789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 18676021 - 18675990
Alignment:
Q  315 gtttttcaaatgatgagacatgatataagatt 346  Q
    ||||||||||||||||||||||||||||||||    
T  18676021 gtttttcaaatgatgagacatgatataagatt 18675990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 18696158 - 18696034
Alignment:
Q  20 ggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatcttttcaattatagcaatacttcattatcacaatttgtgcctcctcta 119  Q
    ||||||| |||||||| |||||| ||||||||||| | || |||||||||||||            |||| |||||||||||||||||   ||| ||||     
T  18696158 ggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatatct------------caatgcttcattatcacaatttcatcctactctg 18696071  T
Q  120 aaaaagaaaagattgatggaagttggagtttcagaga 156  Q
    |||||| | ||||| |||||||| |||||||||||||    
T  18696070 aaaaagcatagatttatggaagtcggagtttcagaga 18696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 18720551 - 18720520
Alignment:
Q  315 gtttttcaaatgatgagacatgatataagatt 346  Q
    ||||||||||||||||||||||||||||||||    
T  18720551 gtttttcaaatgatgagacatgatataagatt 18720520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18686352 - 18686299
Alignment:
Q  20 ggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    ||||||| |||||||| || ||| ||||||||||| |||| |||||||||||||    
T  18686352 ggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatatct 18686299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18728278 - 18728225
Alignment:
Q  20 ggatgtggtattcaccgatccttctagtagaaagacaaaactagatgaatatct 73  Q
    ||||||| |||||||| |||||| ||||||| ||| |||| |||||||||||||    
T  18728278 ggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatatct 18728225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 26139533 - 26139607
Alignment:
Q  86 caatacttcattatcacaatttgtgcctcctctaaaaaagaaaagattgatggaagttggagtttcagagacaga 160  Q
    |||||||||||||||||||||| | ||||| ||||||||| | |||||  |||| || ||| || ||||||||||    
T  26139533 caatacttcattatcacaatttctccctccactaaaaaaggatagatttgtggatgtaggaattccagagacaga 26139607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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